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Ac updates #119

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merged 24 commits into from
Apr 1, 2024
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9094860
have removed cgat/SequencePairProperties.py to simplify dependancies
Acribbs Apr 1, 2024
e8e6dd3
removed cgat2rdf to make repo easier to maintain
Acribbs Apr 1, 2024
0077438
have updated numpy and pandas to specify correct float and int to sat…
Acribbs Apr 1, 2024
1ef56ed
have removed WrapperCodeML because I have no idea what it does so tha…
Acribbs Apr 1, 2024
489c5fa
have removed WrapperCodeML documentation too
Acribbs Apr 1, 2024
dabdc70
added import tests to github actions
Acribbs Apr 1, 2024
bb5893e
updated tests for unstrip, md5sum is different but output looks the s…
Acribbs Apr 1, 2024
127c685
fix github actions yml
Acribbs Apr 1, 2024
4f646b3
updated test for unstrip as updated old one
Acribbs Apr 1, 2024
83a2198
added new test for bam2bam set-nh as output is different md5sum but c…
Acribbs Apr 1, 2024
0510079
updated downsample paired, looks like same output but likely because …
Acribbs Apr 1, 2024
942937c
updated downsample single tests, likely related to .int and .float ch…
Acribbs Apr 1, 2024
493d032
updated bamfiltered because of .int and .float changes
Acribbs Apr 1, 2024
78cd71c
updated set sequence because of int and float changes in numpy
Acribbs Apr 1, 2024
e98871e
updated strip_match to reflect changes in the float and int
Acribbs Apr 1, 2024
999ae34
updated strip_sequence
Acribbs Apr 1, 2024
2a7a9cd
updated strip quality
Acribbs Apr 1, 2024
cc91d91
updated unset mapq
Acribbs Apr 1, 2024
3d4ba0d
updated unset mapq
Acribbs Apr 1, 2024
e5f14a4
import of cnested list is not working during github testing, but is l…
Acribbs Apr 1, 2024
5102e98
modified setup from setup.py to pip
Acribbs Apr 1, 2024
4b169bb
update geneprofile as np floats wrong
Acribbs Apr 1, 2024
2b3bd72
update dnumpy floats
Acribbs Apr 1, 2024
4b376fe
have removed csv2db as its in cgatcore and imports this as a module a…
Acribbs Apr 1, 2024
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updated strip_match to reflect changes in the float and int
Acribbs committed Apr 1, 2024

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commit e98871e4ebfd525b8291af58c5698193af180f40
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