ADD docs

.gitignore

@@ -22,9 +22,16 @@ GNUmakefile
 /diff/*.pdf
 /diff/*.tex
 /new/*.pdf
+
+# documentation
+.sass-cache/
 /.jekyll-cache
 /.jekyll-metadata
 /_site
+Gemfile
+Gemfile.lock
+.bundle/
+vendor/
 
 # local
 /local

_config.yml

@@ -0,0 +1,46 @@
+# Welcome to Jekyll!
+#
+# This config file is meant for settings that affect your whole blog, values
+# which you are expected to set up once and rarely edit after that. If you find
+# yourself editing this file very often, consider using Jekyll's data files
+# feature for the data you need to update frequently.
+#
+# For technical reasons, this file is *NOT* reloaded automatically when you use
+# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
+
+# Site settings
+# These are used to personalize your new site. If you look in the HTML files,
+# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
+# You can create any custom variable you would like, and they will be accessible
+# in the templates via {{ site.myvariable }}.
+title: EU format specifications
+email: [email protected]
+description: >- # this means to ignore newlines until "baseurl:"
+  Epitranscriptome unified format (EUF) for bedRMod specifications.
+baseurl: "/euf-specs" # the subpath of your site, e.g. /blog
+url: "https://dieterich-lab.github.io" # the base hostname & protocol for your site, e.g. http://example.com
+github_username:  dieterich-lab
+
+# Build settings
+markdown: kramdown
+theme: minima
+plugins:
+  - jekyll-feed
+
+exclude:
+  - Gemfile
+  - Gemfile.lock
+  - node_modules
+  - vendor/bundle/
+  - vendor/cache/
+  - vendor/gems/
+  - vendor/ruby/
+  - diff/
+  - new/
+  - scripts/
+  - tests/
+  - examples/
+  - README.md
+  - MAINTAINERS.md
+  - Makefile 
+  - "*.tex"

about.md

@@ -0,0 +1,7 @@
+---
+layout: page
+title: About
+permalink: /about/
+---
+
+The bedRMod format originated in the [Transregio 319 RMaP](https://www.trr319-rmap.de) to support the [Human RNome Project](https://humanrnomeproject.org), and is used as the main data format in the [Sci-ModoM](https://scimodom.dieterichlab.org/) database. 

index.md

@@ -0,0 +1,20 @@
+---
+# Feel free to add content and custom Front Matter to this file.
+# To modify the layout, see https://jekyllrb.com/docs/themes/#overriding-theme-defaults
+
+<!-- layout: home -->
+layout: default
+title: EU format specifications
+---
+
+
+The bedRMod format, similar to the [ENCODE bedMethyl](https://www.encodeproject.org/data-standards/wgbs) or the [extended bedMethyl](https://nanoporetech.github.io/modkit) format proposed by Oxford Nanopre Technologies, aims to formalize the representation of RNA modifications.
+
+The bedRMod format is compatible with the BED (Browser Extensible Data) format, and most of the specifications are directly derived from the offical 
+BED specifications, available under the [SAM/BAM and related specifications](http://samtools.github.io/hts-specs).
+
+
+Specifications:
+
+- [bedRModv1.8](bedRModv1.8.pdf)
+