Merge pull request #5 from domonik/new-dev #1

	name: build-github-pages
	env:
	GITHUB_ACTOR: domonik
	GITHUB_REPOSITORY: domonik/RNAdist

	on:
	push:
	tags:
	- "v..*"



	# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
	permissions:
	contents: write
	pages: write
	id-token: write

	jobs:
	build_docs:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	ref: ${{ github.event.workflow_run.head_branch }}

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.10


	- name: create environment with mamba
	uses: conda-incubator/setup-miniconda@v2
	with:
	channels: conda-forge,defaults
	auto-activate-base: false
	activate-environment: rnadist_doc
	environment-file: docs/environment.yml

	- name: Render Rmd files
	run: \|
	eval "$(conda shell.bash hook)"
	conda activate rnadist_doc
	cd docs
	make html
	cd ..

	- name: Upload artifact
	uses: actions/upload-pages-artifact@v2
	with:
	# Upload entire repository
	path: 'docs/build/html'

	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v2

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