fixes python version string #5
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name: "testPackage" | |
on: | |
pull_request: | |
branches: | |
- main | |
jobs: | |
test-package: | |
runs-on: "ubuntu-22.04" | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [ "3.10", "3.11", "3.12" ] | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: create environment with mamba | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
channels: conda-forge,defaults,bioconda | |
auto-activate-base: false | |
activate-environment: RNAdistEnv | |
environment-file: environment.yml | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install package | |
run: | | |
eval "$(conda shell.bash hook)" | |
conda activate RNAdistEnv | |
pip install ./ --no-deps --no-build-isolation | |
pip install pytest | |
- name: test package | |
run: | | |
eval "$(conda shell.bash hook)" | |
conda activate RNAdistEnv | |
rm RNAdist/ -r # Needs to be removed since it will try to test uncompiled package instead | |
pytest --pyargs RNAdist |