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fixes missing old cp implementation when generating docs #7

fixes missing old cp implementation when generating docs

fixes missing old cp implementation when generating docs #7

Workflow file for this run

name: "testPackage"
on:
pull_request:
branches:
- main
jobs:
test-package:
runs-on: "ubuntu-22.04"
strategy:
fail-fast: false
matrix:
python-version: [ "3.10", "3.11", "3.12" ]
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: create environment with mamba
uses: conda-incubator/setup-miniconda@v3
with:
channels: conda-forge,defaults,bioconda
auto-activate-base: false
activate-environment: RNAdistEnv
environment-file: environment.yml
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install package
run: |
eval "$(conda shell.bash hook)"
conda activate RNAdistEnv
pip install ./ --no-deps --no-build-isolation
pip install pytest
- name: test package
run: |
eval "$(conda shell.bash hook)"
conda activate RNAdistEnv
rm RNAdist/ -r # Needs to be removed since it will try to test uncompiled package instead
pytest --pyargs RNAdist