separate testing and coverage

edikedik · Jan 28, 2024 · 3d6b5c0 · 3d6b5c0
1 parent 7b9a357
commit 3d6b5c0
Showing 1 changed file with 22 additions and 7 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -1,4 +1,4 @@
-name: Testing
+name: Testing and Coverage
 
 on: [ push ]
 
@@ -28,9 +28,6 @@ jobs:
           use-mamba: true
           channels: conda-forge, defaults, bioconda
           channel-priority: true
-#          activate-environment: lXt-dev
-#          environment-file: environment.yml
-#          use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
       - uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
@@ -46,8 +43,26 @@ jobs:
           pytest
           --cov=lXtractor 
           --cov-branch 
-          --cov-report=term-missing
-      - name: Publish cov
+          --cov-report=xml # Changed to XML format for interoperability
+      - name: Upload coverage data
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-report-${{ matrix.python-version }}
+          path: coverage-report-${{ matrix.python-version }}.xml
+
+  publish-coverage:
+    name: Coverage
+    needs: test
+    runs-on: ubuntu-latest
+    steps:
+      - name: checkout
+        uses: actions/checkout@v3
+      - name: Download coverage data
+        uses: actions/download-artifact@v3
+        with:
+          name: coverage-report-3.10
+          path: coverage-report-3.10.xml
+      - name: Publish Coverage
         run: coveralls --service=github
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}