Prepare to Python3.13

[elazarg]

Summary by CodeRabbit

• New Features

  • Introduced a new instrument function in the scripts/instrument.sh file to execute a Python script with specific command-line arguments.
  • Added a new flag --step in multiple experiment configurations to control step parameters.
  • New functions for managing CRIU options and handling coredumps have been implemented.

• Bug Fixes

  • Updated the persist.self_coredump() method calls to include descriptive string arguments for better logging.

• Refactor

  • Simplified the argument parsing in instrument.py, enhancing the command-line interface.
  • Restructured CRIU-related functionality in checkpoint/persist.py for clarity and modularization.

• Documentation

  • Updated comments and descriptions in various files for better understanding of the changes.

• Chores

  • Removed the matplotlib dependency from requirements.txt.

[coderabbitai]

Caution

Review failed

The pull request is closed.

Walkthrough

The changes in this pull request include the addition of a new file checkpoint/criu.py that implements functions and a context manager for managing CRIU (Checkpoint/Restore In Userspace) options. The existing checkpoint/criu_binding.py file is removed, consolidating CRIU functionality into the new file. The .gitignore file is updated to ignore criu_images. Other modifications include updates to several K-Means clustering scripts, adjustments to argument parsing in instrument.py, and enhancements to various files related to error handling and functionality improvements across the codebase.

Changes

File	Change Summary
.gitignore	Added entry for criu_images to be ignored by Git.
checkpoint/criu.py	New file defining CRIU-related functions and a context manager.
checkpoint/criu_binding.py	Removed file that contained CRIU function bindings.
checkpoint/ctypes_modern.py	Updated Clibrary constructor to accept an optional namespace_prefix.
checkpoint/persist.py	Refactored CRIU handling; added init_opts and make_dump functions.
experiment/k_means/flags.txt	Added new flag --step=1.
experiment/k_means/instrumented.py	Modified centroid calculation logic in run function.
experiment/k_means/main.py	Updated centroid calculation in run function.
experiment/k_means/naive.py	Adjusted nearest centroid calculation in run function.
experiment/k_means/proc.py	Modified persist.self_coredump() call to include a string argument.
experiment/k_means/vm.py	Updated nearest centroid calculation in run function.
experiment/omp/args.txt	Changed --k parameter value from 200 to 35.
experiment/omp/flags.txt	Added new flag --step=1.
experiment/omp/proc.py	Modified persist.self_coredump() call to include a string argument.
experiment/pivoter/flags.txt	Added new flag --step=50.
experiment/pivoter/proc.py	Modified persist.self_coredump() call to include a string argument.
experiment/trivial/flags.txt	Added new flag --step=1.
experiment/trivial/proc.py	Updated persist.self_coredump() call to include a string argument.
instrument.py	Enhanced argument parsing; added --no-generate flag.
pythia/ast_transform.py	Updated make_coredump and added new make_for_tcp function.
pythia/dom_typed_pointer.py	Added collect_garbage method and updated unop_to_str function.
pythia/instruction_cfg.py	Updated is_jump function for Python version checks.
pythia/tac.py	Added new BOOL operation to UnOp enum and updated handling for bytecode.
pythia/type_system.py	Enhanced operator mapping for "bool".
requirements.txt	Removed matplotlib==3.9.0 dependency.
scripts/instrument.sh	Added instrument function to execute instrument.py.
scripts/selfcheckpoint.c	Renamed function from set_criu to setup_criu.
test_data/iteration.py	Removed pair function; added simple_tuple and modified related functions.
test_data/lists.py	Added list_set function to modify list elements.
tests/test_generate.py	Updated proc_transform function to include a tag parameter.
typeshed_mini/numpy.pyi	Expanded ndarray class capabilities and updated method signatures.

Poem

🐰 In the code where rabbits dwell,
New functions rise, all is well.
CRIU's magic, a leap we take,
With flags and steps, no mistake!
From lists to tuples, we hop and play,
In this code garden, we’ll dance all day! 🌼

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