Update makemodel_scalar.py #64
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python Package using Conda | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| #TODO:jobs: | |
| # build: | |
| # runs-on: ${{matrix.os}} | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest, windows-latest]#, macOS-latest] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.9.13 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.9.13 | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install dependencies | |
| run: | | |
| conda env update --file env.yml --name base | |
| - name: Lint with flake8 | |
| run: | | |
| conda install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| python gnnom/mysaxsdocument/setup.py install | |
| conda install pytest | |
| pytest | |
| - name: Test run | |
| run: | | |
| python setup.py sdist | |
| tar -xvf dist/gnnom-1.0.tar.gz | |
| cd gnnom-1.0 | |
| python gnnom/apply_nn.py p mw testdata/SASDCF8.dat 44.66 2.74 --n 1000 --mode DEBUG --units nanometer | |
| python gnnom/apply_nn.py p dmax testdata/SASDCF8.dat 44.66 2.74 --n 1000 --mode DEBUG --units nanometer | |
| python gnnom/apply_nn.py p mw testdata/SASDCK2.dat 0.037 32.87 --n 1001 --mode DEBUG --units angstrom | |
| python gnnom/apply_nn.py p dmax testdata/SASDCK2.dat 0.037 32.87 --n 1001 --mode DEBUG --units angstrom | |
| python gnnom/apply_nn.py p mw testdata/SASDAB2.dat 1206.41 1.3 --n 1002 --mode DEBUG --units nanometer | |
| python gnnom/apply_nn.py p dmax testdata/SASDAB2.dat 1206.41 1.3 --n 1002 --mode DEBUG --units nanometer | |
| python gnnom/apply_nn.py p mw testdata/SASDA92.dat 221.0 4.1 --n 1003 --mode DEBUG --units nanometer | |
| python gnnom/apply_nn.py p dmax testdata/SASDA92.dat 221.0 4.1 --n 1003 --mode DEBUG --units nanometer | |
| find . -name *.svg | |
| pwd | |
| - name: 'Upload Artifact' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: svg-histo-artifact | |
| path: | |
| gnnom-1.0/testdata/p-*.svg | |
| retention-days: 5 | |
| # - name: 'Build and push to Docker hub' | |
| # uses: mr-smithers-excellent/docker-build-push@v5 | |
| # with: | |
| # image: dmolodenskiy/gnnom | |
| # registry: docker.io | |
| # dockerfile: docker/Dockerfile | |
| # username: ${{ secrets.DOCKER_USERNAME }} | |
| # password: ${{ secrets.DOCKER_PASSWORD }} |