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eonu committed Mar 24, 2019
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42 changes: 42 additions & 0 deletions .gitignore
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## Ruby
*.gem
*.rbc
/.config
/coverage/
/InstalledFiles
/pkg/
/spec/reports/
/spec/tmp/
/spec/examples.txt
/test/tmp/
/test/version_tmp/
/tmp/

## Used by dotenv library to load environment variables
.env

## Documentation cache and generated files:
/.yardoc/
/_yardoc/
/doc/
/rdoc/
/coverage/

## Environment normalization:
/.bundle/
/vendor/bundle
/lib/bundler/man/

## OS generated files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

## Other
/.bundle/
Gemfile.lock
.rvmrc
4 changes: 4 additions & 0 deletions .travis.yml
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language: ruby
before_install: gem update --system
script: bundle exec rake
rvm: 2.5
3 changes: 3 additions & 0 deletions CHANGELOG.md
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# 0.1.0

Initial commit! 🎉
2 changes: 2 additions & 0 deletions Gemfile
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source 'https://rubygems.org'
gemspec
21 changes: 21 additions & 0 deletions LICENSE
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MIT License

Copyright (c) 2019 Edwin Onuonga

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
3 changes: 3 additions & 0 deletions README.md
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# Arx

A Ruby interface for querying academic papers on the arXiv search API.
7 changes: 7 additions & 0 deletions Rakefile
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require 'bundler/gem_tasks'
require 'rspec/core/rake_task'

desc 'Run application specs'
RSpec::Core::RakeTask.new :spec

task default: [:spec]
24 changes: 24 additions & 0 deletions arx.gemspec
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lib = File.expand_path('../lib', __FILE__)
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
require 'arx/version'

Gem::Specification.new do |spec|
spec.name = 'arx'
spec.version = Arx::VERSION
spec.authors = ['Edwin Onuonga']
spec.email = ['[email protected]']

spec.summary = %q{A Ruby interface for querying academic papers on the arXiv search API.}
spec.license = 'MIT'
spec.require_paths = ['lib']
spec.files = Dir.glob('lib/**/*', File::FNM_DOTMATCH) + %w[
Gemfile LICENSE CHANGELOG.md README.md Rakefile arx.gemspec
]

spec.add_runtime_dependency 'nokogiri', '~> 1.10'
spec.add_runtime_dependency 'nokogiri-happymapper', '~> 0.8'

spec.add_development_dependency 'bundler', '~> 2.0'
spec.add_development_dependency 'rake', '~> 12.3'
spec.add_development_dependency 'rspec', '~> 3.7'
end
53 changes: 53 additions & 0 deletions lib/arx.rb
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# frozen_string_literal: true

require 'nokogiri'
require 'open-uri'
require 'arx/version'
require 'arx/categories'
require 'arx/query/query'
require 'arx/query/validate'
require 'arx/entities/author'
require 'arx/entities/category'
require 'arx/entities/paper'

# A Ruby interface for querying academic papers on the arXiv search API.
module Arx

# The arXiv search API endpoint.
ENDPOINT = 'http://export.arxiv.org/api/query?'

# Performs a search query for papers on the arXiv search API.
#
# @param ids [Array<String>] The IDs of the arXiv papers to restrict the query to.
# @param sort_by [Symbol] The sorting criteria for the returned results (see {Query::SORT_BY}).
# @param sort_order [Symbol] The sorting order for the returned results (see {Query::SORT_ORDER}).
# @return [Array<Paper>, Paper] The {Paper}(s) found by the search query.
def self.search(*ids, sort_by: :relevance, sort_order: :descending)
query = Query.new(*ids, sort_by: sort_by, sort_order: sort_order)

yield query if block_given?

document = Nokogiri::XML open(ENDPOINT + query.to_s + '&max_results=10000')
document.remove_namespaces!

results = Paper.parse(document, single: false).reject {|paper| paper.id.empty?}
raise MissingPaper.new(ids.first) if results.empty? && ids.size == 1
ids.size == 1 && results.size == 1 ? results.first : results
end
end

# Performs a search query for papers on the arXiv search API.
#
# @note This is an alias of the {Arx.search} method.
# @see Arx.search
# @param ids [Array<String>] The IDs of the arXiv papers to restrict the query to.
# @param sort_by [Symbol] The sorting criteria for the returned results (see {Arx::Query::SORT_BY}).
# @param sort_order [Symbol] The sorting order for the returned results (see {Arx::Query::SORT_ORDER}).
# @return [Array<Paper>, Paper] The {Arx::Paper}(s) found by the search query.
def Arx(*ids, sort_by: :relevance, sort_order: :descending, &block)
if block_given?
Arx.search *ids, sort_by: sort_by, sort_order: sort_order, &block
else
Arx.search *ids, sort_by: sort_by, sort_order: sort_order
end
end
161 changes: 161 additions & 0 deletions lib/arx/categories.rb
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# frozen_string_literal: true

module Arx

# arXiv categories and their full names
CATEGORIES = {
'astro-ph' => 'Astrophysics',
'astro-ph.CO' => 'Cosmology and Nongalactic Astrophysics',
'astro-ph.EP' => 'Earth and Planetary Astrophysics',
'astro-ph.GA' => 'Astrophysics of Galaxies',
'astro-ph.HE' => 'High Energy Astrophysical Phenomena',
'astro-ph.IM' => 'Instrumentation and Methods for Astrophysics',
'astro-ph.SR' => 'Solar and Stellar Astrophysics',
'cond-mat.dis-nn' => 'Disordered Systems and Neural Networks',
'cond-mat.mes-hall' => 'Mesoscale and Nanoscale Physics',
'cond-mat.mtrl-sci' => 'Materials Science',
'cond-mat.other' => 'Other Condensed Matter',
'cond-mat.quant-gas' => 'Quantum Gases',
'cond-mat.soft' => 'Soft Condensed Matter',
'cond-mat.stat-mech' => 'Statistical Mechanics',
'cond-mat.str-el' => 'Strongly Correlated Electrons',
'cond-mat.supr-con' => 'Superconductivity',
'cs.AI' => 'Artificial Intelligence',
'cs.AR' => 'Hardware Architecture',
'cs.CC' => 'Computational Complexity',
'cs.CE' => 'Computational Engineering, Finance, and Science',
'cs.CG' => 'Computational Geometry',
'cs.CL' => 'Computation and Language',
'cs.CR' => 'Cryptography and Security',
'cs.CV' => 'Computer Vision and Pattern Recognition',
'cs.CY' => 'Computers and Society',
'cs.DB' => 'Databases',
'cs.DC' => 'Distributed, Parallel, and Cluster Computing',
'cs.DL' => 'Digital Libraries',
'cs.DM' => 'Discrete Mathematics',
'cs.DS' => 'Data Structures and Algorithms',
'cs.ET' => 'Emerging Technologies',
'cs.FL' => 'Formal Languages and Automata Theory',
'cs.GL' => 'General Literature',
'cs.GR' => 'Graphics',
'cs.GT' => 'Computer Science and Game Theory',
'cs.HC' => 'Human-Computer Interaction',
'cs.IR' => 'Information Retrieval',
'cs.IT' => 'Information Theory',
'cs.LG' => 'Learning',
'cs.LO' => 'Logic in Computer Science',
'cs.MA' => 'Multiagent Systems',
'cs.MM' => 'Multimedia',
'cs.MS' => 'Mathematical Software',
'cs.NA' => 'Numerical Analysis',
'cs.NE' => 'Neural and Evolutionary Computing',
'cs.NI' => 'Networking and Internet Architecture',
'cs.OH' => 'Other Computer Science',
'cs.OS' => 'Operating Systems',
'cs.PF' => 'Performance',
'cs.PL' => 'Programming Languages',
'cs.RO' => 'Robotics',
'cs.SC' => 'Symbolic Computation',
'cs.SD' => 'Sound',
'cs.SE' => 'Software Engineering',
'cs.SI' => 'Social and Information Networks',
'cs.SY' => 'Systems and Control',
'econ.EM' => 'Econometrics',
'eess.AS' => 'Audio and Speech Processing',
'eess.IV' => 'Image and Video Processing',
'eess.SP' => 'Signal Processing',
'gr-qc' => 'General Relativity and Quantum Cosmology',
'hep-ex' => 'High Energy Physics - Experiment',
'hep-lat' => 'High Energy Physics - Lattice',
'hep-ph' => 'High Energy Physics - Phenomenology',
'hep-th' => 'High Energy Physics - Theory',
'math.AC' => 'Commutative Algebra',
'math.AG' => 'Algebraic Geometry',
'math.AP' => 'Analysis of PDEs',
'math.AT' => 'Algebraic Topology',
'math.CA' => 'Classical Analysis and ODEs',
'math.CO' => 'Combinatorics',
'math.CT' => 'Category Theory',
'math.CV' => 'Complex Variables',
'math.DG' => 'Differential Geometry',
'math.DS' => 'Dynamical Systems',
'math.FA' => 'Functional Analysis',
'math.GM' => 'General Mathematics',
'math.GN' => 'General Topology',
'math.GR' => 'Group Theory',
'math.GT' => 'Geometric Topology',
'math.HO' => 'History and Overview',
'math.IT' => 'Information Theory',
'math.KT' => 'K-Theory and Homology',
'math.LO' => 'Logic',
'math.MG' => 'Metric Geometry',
'math.MP' => 'Mathematical Physics',
'math.NA' => 'Numerical Analysis',
'math.NT' => 'Number Theory',
'math.OA' => 'Operator Algebras',
'math.OC' => 'Optimization and Control',
'math.PR' => 'Probability',
'math.QA' => 'Quantum Algebra',
'math.RA' => 'Rings and Algebras',
'math.RT' => 'Representation Theory',
'math.SG' => 'Symplectic Geometry',
'math.SP' => 'Spectral Theory',
'math.ST' => 'Statistics Theory',
'math-ph' => 'Mathematical Physics',
'nlin.AO' => 'Adaptation and Self-Organizing Systems',
'nlin.CD' => 'Chaotic Dynamics',
'nlin.CG' => 'Cellular Automata and Lattice Gases',
'nlin.PS' => 'Pattern Formation and Solitons',
'nlin.SI' => 'Exactly Solvable and Integrable Systems',
'nucl-ex' => 'Nuclear Experiment',
'nucl-th' => 'Nuclear Theory',
'physics.acc-ph' => 'Accelerator Physics',
'physics.ao-ph' => 'Atmospheric and Oceanic Physics',
'physics.app-ph' => 'Applied Physics',
'physics.atm-clus' => 'Atomic and Molecular Clusters',
'physics.atom-ph' => 'Atomic Physics',
'physics.bio-ph' => 'Biological Physics',
'physics.chem-ph' => 'Chemical Physics',
'physics.class-ph' => 'Classical Physics',
'physics.comp-ph' => 'Computational Physics',
'physics.data-an' => 'Data Analysis, Statistics and Probability',
'physics.ed-ph' => 'Physics Education',
'physics.flu-dyn' => 'Fluid Dynamics',
'physics.gen-ph' => 'General Physics',
'physics.geo-ph' => 'Geophysics',
'physics.hist-ph' => 'History and Philosophy of Physics',
'physics.ins-det' => 'Instrumentation and Detectors',
'physics.med-ph' => 'Medical Physics',
'physics.optics' => 'Optics',
'physics.plasm-ph' => 'Plasma Physics',
'physics.pop-ph' => 'Popular Physics',
'physics.soc-ph' => 'Physics and Society',
'physics.space-ph' => 'Space Physics',
'q-bio.BM' => 'Biomolecules',
'q-bio.CB' => 'Cell Behavior',
'q-bio.GN' => 'Genomics',
'q-bio.MN' => 'Molecular Networks',
'q-bio.NC' => 'Neurons and Cognition',
'q-bio.OT' => 'Other Quantitative Biology',
'q-bio.PE' => 'Populations and Evolution',
'q-bio.QM' => 'Quantitative Methods',
'q-bio.SC' => 'Subcellular Processes',
'q-bio.TO' => 'Tissues and Organs',
'q-fin.CP' => 'Computational Finance',
'q-fin.EC' => 'Economics',
'q-fin.GN' => 'General Finance',
'q-fin.MF' => 'Mathematical Finance',
'q-fin.PM' => 'Portfolio Management',
'q-fin.PR' => 'Pricing of Securities',
'q-fin.RM' => 'Risk Management',
'q-fin.ST' => 'Statistical Finance',
'q-fin.TR' => 'Trading and Market Microstructure',
'quant-ph' => 'Quantum Physics',
'stat.AP' => 'Applications',
'stat.CO' => 'Computation',
'stat.ME' => 'Methodology',
'stat.ML' => 'Machine Learning',
'stat.OT' => 'Other Statistics',
'stat.TH' => 'Statistics Theory'
}.freeze
end
13 changes: 13 additions & 0 deletions lib/arx/cleaner.rb
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module Arx

# Class for cleaning strings.
class Cleaner

# Cleans strings.
# @param [String] string Removes newline/return characters and multiple spaces from a string.
# @return [String] The cleaned string.
def self.clean(string)
string.gsub(/\r\n|\r|\n/, ' ').strip.squeeze ' '
end
end
end
29 changes: 29 additions & 0 deletions lib/arx/entities/author.rb
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require 'happymapper'
require 'arx/cleaner'

module Arx

# Entity/model representing an arXiv paper's author.
class Author
include HappyMapper

tag 'author'

# @!method name
# The name of the author.
# @return [String]
element :name, Cleaner, tag: 'name', parser: :clean

# @!method affiliations
# The author's affiliations.
# @return [Array<String>]
has_many :affiliations, Cleaner, tag: 'affiliation', parser: :clean

# @!method affiliations?
# Whether or not the author has any affiliations.
# @return [Boolean]
def affiliations?
!affiliations.empty?
end
end
end
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