Final Project for Bioinformatics using ProgessiveCactus to create an assembly hub with Yeast and Mosquito genomes

The yeast genomes were downloaded from: ftp://ftp.sanger.ac.uk/pub/users/dmc/yeast/latest/cere_assemblies.tgz

The Anophelin genomes can be downloaded from Vectorbase:
https://www.vectorbase.org/download/anopheles-arabiensis-dongolacontigsaarad1fagz
https://www.vectorbase.org/download/anopheles-gambiae-pestchromosomesagamp4fagz

The other two genomes were generated by me and will be used in a publication we are drafting.

The link to the assembly hubs are located at:

http://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&hubUrl=https://hpc.oit.uci.edu/~solarese/YeastHub/hub.txt
http://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&hubUrl=https://hpc.oit.uci.edu/~solarese/MosquitoHub/hub.txt

The root shared data is located https://hpc.oit.uci.edu/~solarese/
two folders are located there containing yeast and mosquito data
https://hpc.oit.uci.edu/~solarese/YeastHub
https://hpc.oit.uci.edu/~solarese/MosquitoHub

The mosquito assembly data can also be downloaded from the MosquitoHub/asm folder along with the annotation data
MosquitoHub/asm/agamP4_chr_4.5.gff3
MosquitoHub/asm/agamP4_chr_4.5.gtf
MosquitoHub/asm/araDS1_contigs_1.5.gtf
MosquitoHub/asm/araDS1_contigs.fa
MosquitoHub/asm/agamP4_chr.fa
MosquitoHub/asm/araDS1_contigs_1.5.gff3