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Revert "Update CHANGELOG.md"
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This reverts commit 0d35834.
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fmalmeida committed Nov 10, 2023
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The tracking for changes started in v2.

## v3.2 -- TBD

* Update unicyler to v0.5.0
* Adjust Pilon polishing module to select how many rounds of poloshing to run. Default is 4.
* Add a directory called `final_assemblies` in the main output directory holding all the assemblies generated in the pipeline execution.

## v3.1.4 -- [2022-Sep-03]
## v3.1.4 -- [2022-Mar-03]

This version addresses the changes discussed in [#36](https://github.com/fmalmeida/MpGAP/issues/36), [#37](https://github.com/fmalmeida/MpGAP/issues/37) and [#38](https://github.com/fmalmeida/MpGAP/issues/38).
Its main changes are:
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* Customized labels to ask for a little bit more on first run
* Added a module config for quast to ask for more memory and cpus on first run, removing it from 'process_low' label
* Added a simple command in pilon module to ensure it starts with a "fresh" output dir to place results
* Added a new option called `--skip_raw_assemblies_polishing` which, when running `hybrid strategy 2` avoids polishing raw long reads assemblies with short reads, instead, it only polishes the assemblies that have been already polished with `medaka`.

## v3.1.3 -- [2022-Mar-03]

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