In image_labeling_whole_well.py, rescale diameter when working with h…

…igher levels (ref #104)
fractal-analytics-platform · Jul 15, 2022 · bae9bd8 · bae9bd8
1 parent 873e854
commit bae9bd8
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/fractal/tasks/image_labeling_whole_well.py b/fractal/tasks/image_labeling_whole_well.py
@@ -26,7 +26,7 @@
 def image_labeling_whole_well(
     zarrurl,
     coarsening_xy=2,
-    labeling_level=1,
+    labeling_level=2,
     labeling_channel=None,
     chl_list=None,
     relabeling=True,
@@ -104,7 +104,7 @@ def image_labeling_whole_well(
         do_3D=False,
         net_avg=False,
         augment=False,
-        diameter=40.0,
+        diameter=(40.0 / coarsening_xy**labeling_level),
         cellprob_threshold=0.0,
     )
     mask = np.expand_dims(mask, axis=0)