v1.1.5

gagolews · Aug 22, 2024 · a0bd30a · a0bd30a
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diff --git a/.devel/sphinx/news.md b/.devel/sphinx/news.md
@@ -1,7 +1,7 @@
 # Changelog
 
 
-## 1.1.5 (pending)
+## 1.1.5 (2024-08-22)
 
 -   Minor extensions/updates.
 

diff --git a/.github/workflows/py.yml b/.github/workflows/py.yml
@@ -1,4 +1,4 @@
-name: genieclust for Python
+name: clustering-benchmarks for Python
 
 on:
   push:
@@ -17,7 +17,7 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies

diff --git a/NEWS b/NEWS
@@ -1,7 +1,7 @@
 # Changelog
 
 
-## 1.1.5 (pending)
+## 1.1.5 (2024-08-22)
 
 -   Minor extensions/updates.
 

diff --git a/docs/clustbench-documentation.html b/docs/clustbench-documentation.html
@@ -895,7 +895,7 @@ <h1>Documentation<a class="headerlink" href="#documentation" title="Link to this
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -452,7 +452,7 @@ <h2>T</h2>
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/index.html b/docs/index.html
@@ -431,7 +431,7 @@ <h1>A Framework for Benchmarking Clustering Algorithms<a class="headerlink" href
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/news.html b/docs/news.html
@@ -306,34 +306,34 @@
         <article role="main">
           <section class="tex2jax_ignore mathjax_ignore" id="changelog">
 <h1>Changelog<a class="headerlink" href="#changelog" title="Link to this heading">¶</a></h1>
-<section id="pending">
-<h2>1.1.5 (pending)<a class="headerlink" href="#pending" title="Link to this heading">¶</a></h2>
+<section id="id1">
+<h2>1.1.5 (2024-08-22)<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>Minor extensions/updates.</p></li>
 </ul>
 </section>
-<section id="id1">
-<h2>1.1.4 (2023-12-12)<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2>
+<section id="id2">
+<h2>1.1.4 (2023-12-12)<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>[BUGFIX] #5: <code class="docutils literal notranslate"><span class="pre">load_dataset</span></code> threw an <code class="docutils literal notranslate"><span class="pre">OSError</span></code> while trying to load
 a dataset.</p></li>
 </ul>
 </section>
-<section id="id2">
-<h2>1.1.2 (2023-10-19)<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2>
+<section id="id3">
+<h2>1.1.2 (2023-10-19)<a class="headerlink" href="#id3" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>[BUGFIX] <code class="docutils literal notranslate"><span class="pre">adjusted_asymetric_accuracy</span></code> is now called
 <code class="docutils literal notranslate"><span class="pre">normalized_clustering_accuracy</span></code> in <code class="docutils literal notranslate"><span class="pre">genieclust</span></code>.</p></li>
 </ul>
 </section>
-<section id="id3">
-<h2>1.1.1 (2022-10-06)<a class="headerlink" href="#id3" title="Link to this heading">¶</a></h2>
+<section id="id4">
+<h2>1.1.1 (2022-10-06)<a class="headerlink" href="#id4" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>[BUGFIX] #3: <code class="docutils literal notranslate"><span class="pre">root_dir</span></code> in <code class="docutils literal notranslate"><span class="pre">glob.glob</span></code> is only available Python &gt;= 3.10.</p></li>
 </ul>
 </section>
-<section id="id4">
-<h2>1.1.0 (2022-09-17)<a class="headerlink" href="#id4" title="Link to this heading">¶</a></h2>
+<section id="id5">
+<h2>1.1.0 (2022-09-17)<a class="headerlink" href="#id5" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>The project’s homepage was created. It is available at
 <a class="reference external" href="https://clustering-benchmarks.gagolewski.com/">https://clustering-benchmarks.gagolewski.com/</a>.</p></li>
@@ -344,16 +344,16 @@ <h2>1.1.0 (2022-09-17)<a class="headerlink" href="#id4" title="Link to this head
 <a class="reference external" href="https://github.com/gagolews/clustering-results-v1">https://github.com/gagolews/clustering-results-v1</a>.</p></li>
 </ul>
 </section>
-<section id="id5">
-<h2>1.0.0 (2020-05-08)<a class="headerlink" href="#id5" title="Link to this heading">¶</a></h2>
+<section id="id6">
+<h2>1.0.0 (2020-05-08)<a class="headerlink" href="#id6" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>Datasets in the 1st (v1.0.0) version of the benchmark
 battery are now frozen. The historical snapshot is available at
 DOI: <a class="reference external" href="https://doi.org/10.5281/zenodo.3815066">10.5281/zenodo.3815066</a>.</p></li>
 </ul>
 </section>
-<section id="id6">
-<h2>0.0.0 (2015-12-29)<a class="headerlink" href="#id6" title="Link to this heading">¶</a></h2>
+<section id="id7">
+<h2>0.0.0 (2015-12-29)<a class="headerlink" href="#id7" title="Link to this heading">¶</a></h2>
 <ul>
 <li><p>Version 0 of the benchmark battery consists of the datasets
 studied in: Gagolewski M., Bartoszuk M., Cena A.,
@@ -402,7 +402,7 @@ <h2>0.0.0 (2015-12-29)<a class="headerlink" href="#id6" title="Link to this head
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>
@@ -424,13 +424,13 @@ <h2>0.0.0 (2015-12-29)<a class="headerlink" href="#id6" title="Link to this head
           <div class="toc-tree">
             <ul>
 <li><a class="reference internal" href="#">Changelog</a><ul>
-<li><a class="reference internal" href="#pending">1.1.5 (pending)</a></li>
-<li><a class="reference internal" href="#id1">1.1.4 (2023-12-12)</a></li>
-<li><a class="reference internal" href="#id2">1.1.2 (2023-10-19)</a></li>
-<li><a class="reference internal" href="#id3">1.1.1 (2022-10-06)</a></li>
-<li><a class="reference internal" href="#id4">1.1.0 (2022-09-17)</a></li>
-<li><a class="reference internal" href="#id5">1.0.0 (2020-05-08)</a></li>
-<li><a class="reference internal" href="#id6">0.0.0 (2015-12-29)</a></li>
+<li><a class="reference internal" href="#id1">1.1.5 (2024-08-22)</a></li>
+<li><a class="reference internal" href="#id2">1.1.4 (2023-12-12)</a></li>
+<li><a class="reference internal" href="#id3">1.1.2 (2023-10-19)</a></li>
+<li><a class="reference internal" href="#id4">1.1.1 (2022-10-06)</a></li>
+<li><a class="reference internal" href="#id5">1.1.0 (2022-09-17)</a></li>
+<li><a class="reference internal" href="#id6">1.0.0 (2020-05-08)</a></li>
+<li><a class="reference internal" href="#id7">0.0.0 (2015-12-29)</a></li>
 </ul>
 </li>
 </ul>

diff --git a/docs/py-modindex.html b/docs/py-modindex.html
@@ -334,7 +334,7 @@ <h1>Python Module Index</h1>
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/search.html b/docs/search.html
@@ -328,7 +328,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/searchindex.js b/docs/searchindex.js
diff --git a/docs/weave/clustbench-usage.html b/docs/weave/clustbench-usage.html
@@ -533,7 +533,7 @@ <h2>Applying Clustering Methods Manually<a class="headerlink" href="#applying-cl
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/weave/colouriser.html b/docs/weave/colouriser.html
@@ -365,7 +365,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/weave/contributing.html b/docs/weave/contributing.html
@@ -354,7 +354,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/weave/data-v1.html b/docs/weave/data-v1.html
@@ -533,7 +533,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
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-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/weave/external-validity-measures.html b/docs/weave/external-validity-measures.html
@@ -747,7 +747,7 @@ <h2>Information-Theoretic Measures<a class="headerlink" href="#information-theor
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
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-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
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diff --git a/docs/weave/file-format.html b/docs/weave/file-format.html
@@ -422,7 +422,7 @@ <h2>Clustering Results<a class="headerlink" href="#clustering-results" title="Li
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
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-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

diff --git a/docs/weave/how-to-access.html b/docs/weave/how-to-access.html
@@ -439,7 +439,7 @@ <h2>MATLAB<a class="headerlink" href="#matlab" title="Link to this heading">¶</
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
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               It does not collect any data.
             </div>

diff --git a/docs/weave/internal-validity-measures.html b/docs/weave/internal-validity-measures.html
@@ -575,7 +575,7 @@ <h2>Generalised Dunn Indices<a class="headerlink" href="#generalised-dunn-indice
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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-              Last updated on 2024-07-25T15:57:52+0200.
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               It does not collect any data.
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diff --git a/docs/weave/many-partitions.html b/docs/weave/many-partitions.html
@@ -437,7 +437,7 @@ <h2>Predicted vs Best-Matching Reference Labelling<a class="headerlink" href="#p
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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-              Last updated on 2024-07-25T15:57:52+0200.
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               It does not collect any data.
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diff --git a/docs/weave/noise-points.html b/docs/weave/noise-points.html
@@ -474,7 +474,7 @@ <h2>Evaluating Similarity<a class="headerlink" href="#evaluating-similarity" tit
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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-              Last updated on 2024-07-25T15:57:52+0200.
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               It does not collect any data.
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diff --git a/docs/weave/results-v1.html b/docs/weave/results-v1.html
@@ -415,7 +415,7 @@ <h2>Feature Engineering<a class="headerlink" href="#feature-engineering" title="
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
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               It does not collect any data.
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diff --git a/docs/weave/suite-v1.html b/docs/weave/suite-v1.html
@@ -4209,7 +4209,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
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               It does not collect any data.
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diff --git a/docs/weave/true-vs-predicted.html b/docs/weave/true-vs-predicted.html
@@ -584,7 +584,7 @@ <h2>External Cluster Validity Measures<a class="headerlink" href="#external-clus
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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-              Last updated on 2024-07-25T15:57:52+0200.
+              Last updated on 2024-08-22T12:55:54+0200.
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               It does not collect any data.
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diff --git a/docs/z_bibliography.html b/docs/z_bibliography.html
@@ -611,7 +611,7 @@ <h2>Bibliography<a class="headerlink" href="#bibliography" title="Link to this h
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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               It does not collect any data.
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diff --git a/requirements.txt b/requirements.txt
@@ -1,6 +1,6 @@
+Cython
 numpy
 scipy
-cython
 matplotlib
 scikit-learn
 genieclust