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1 change: 1 addition & 0 deletions .devel/sphinx/conf.py
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pkg_version = clustbench.__version__
copyright_year = '2020–2023'
html_baseurl = "https://clustering-benchmarks.gagolewski.com/"
html_logo = "https://www.gagolewski.com/_static/img/clustbench.png"
github_url = "https://github.com/gagolews/clustering-benchmarks/"
github_star_repo = "gagolews/clustering-benchmarks" # or None to disable
analytics_id = None # don't use it! this site does not track its users
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6 changes: 6 additions & 0 deletions .devel/sphinx/index.md
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::::{toctree}
:maxdepth: 2
:caption: Methodology
:hidden:

Introduction <self>
weave/true-vs-predicted
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::::{toctree}
:maxdepth: 2
:caption: Benchmark Batteries
:hidden:

weave/suite-v1
weave/data-v1
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weave/contributing
::::


::::{toctree}
:maxdepth: 1
:caption: Python API
:hidden:

weave/clustbench-usage
clustbench-documentation
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::::{toctree}
:maxdepth: 1
:caption: See Also
:hidden:

Author's Homepage <https://www.gagolewski.com/>
Data Wrangling in Python <https://datawranglingpy.gagolewski.com/>
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::::{toctree}
:maxdepth: 1
:caption: Appendix
:hidden:

weave/colouriser
weave/external-validity-measures
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5 changes: 4 additions & 1 deletion docs/clustbench-documentation.html
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
</div>

<span class="sidebar-brand-text">
<a class="sidebar-brand" href="index.html">Clustering Benchmarks</a>
Expand Down Expand Up @@ -840,7 +843,7 @@ <h1>Documentation<a class="headerlink" href="#documentation" title="Link to this
Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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5 changes: 4 additions & 1 deletion docs/genindex.html
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
</div>

<span class="sidebar-brand-text">
<a class="sidebar-brand" href="index.html">Clustering Benchmarks</a>
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Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
Built with <a href="https://sphinx-doc.org/">Sphinx</a>
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84 changes: 4 additions & 80 deletions docs/index.html
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="#"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
</div>

<span class="sidebar-brand-text">
<a class="sidebar-brand" href="#">Clustering Benchmarks</a>
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references mentioned in the description files corresponding
to each dataset.</p>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Methodology</span></p>
<ul class="current">
<li class="toctree-l1 current"><a class="current reference internal" href="#">Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="weave/true-vs-predicted.html">True vs Predicted Clusters</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/true-vs-predicted.html#data">Data</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/true-vs-predicted.html#reference-labels">Reference Labels</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/true-vs-predicted.html#predicted-labels">Predicted Labels</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/true-vs-predicted.html#permuting-cluster-ids">Permuting Cluster IDs</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/true-vs-predicted.html#confusion-matrix">Confusion Matrix</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/true-vs-predicted.html#external-cluster-validity-measures">External Cluster Validity Measures</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="weave/noise-points.html">Noise Points</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/noise-points.html#example">Example</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/noise-points.html#discovering-clusters">Discovering Clusters</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/noise-points.html#evaluating-similarity">Evaluating Similarity</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="weave/many-partitions.html">There Can Be Many Valid Partitions</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/many-partitions.html#alternative-labellings">Alternative Labellings</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/many-partitions.html#predicted-vs-best-matching-reference-labelling">Predicted vs Best-Matching Reference Labelling</a></li>
</ul>
</li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Benchmark Batteries</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="weave/suite-v1.html">Benchmark Suite (v1.1.0)</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#wut"><code class="docutils literal notranslate"><span class="pre">wut</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#sipu"><code class="docutils literal notranslate"><span class="pre">sipu</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#fcps"><code class="docutils literal notranslate"><span class="pre">fcps</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#graves"><code class="docutils literal notranslate"><span class="pre">graves</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#other"><code class="docutils literal notranslate"><span class="pre">other</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#uci"><code class="docutils literal notranslate"><span class="pre">uci</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#mnist"><code class="docutils literal notranslate"><span class="pre">mnist</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#g2mg"><code class="docutils literal notranslate"><span class="pre">g2mg</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/suite-v1.html#h2mg"><code class="docutils literal notranslate"><span class="pre">h2mg</span></code></a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="weave/data-v1.html">Explore Datasets (v1.1.0)</a></li>
<li class="toctree-l1"><a class="reference internal" href="weave/results-v1.html">Clustering Results Repository (v1.1.0)</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/results-v1.html#methods">Methods</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/results-v1.html#feature-engineering">Feature Engineering</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="weave/file-format.html">File Format Specification</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/file-format.html#benchmark-datasets">Benchmark Datasets</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/file-format.html#clustering-results">Clustering Results</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="weave/how-to-access.html">Access from Python, R, MATLAB, etc.</a><ul>
<li class="toctree-l2"><a class="reference internal" href="weave/how-to-access.html#python">Python</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/how-to-access.html#r">R</a></li>
<li class="toctree-l2"><a class="reference internal" href="weave/how-to-access.html#matlab">MATLAB</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="weave/contributing.html">Contributing</a></li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Python API</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="weave/clustbench-usage.html">Using <em>clustbench</em></a></li>
<li class="toctree-l1"><a class="reference internal" href="clustbench-documentation.html">Documentation</a></li>
<li class="toctree-l1"><a class="reference external" href="https://github.com/gagolews/clustering-benchmarks">Source Code (GitHub)</a></li>
<li class="toctree-l1"><a class="reference external" href="https://pypi.org/project/clustering-benchmarks">PyPI Entry</a></li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">See Also</span></p>
<ul>
<li class="toctree-l1"><a class="reference external" href="https://www.gagolewski.com/">Author's Homepage</a></li>
<li class="toctree-l1"><a class="reference external" href="https://datawranglingpy.gagolewski.com/">Data Wrangling in Python</a></li>
<li class="toctree-l1"><a class="reference external" href="https://deepr.gagolewski.com">Deep R Programming</a></li>
<li class="toctree-l1"><a class="reference external" href="https://genieclust.gagolewski.com/">genieclust Package</a></li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Appendix</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="weave/colouriser.html">Colouriser: A Planar Data Editor</a></li>
<li class="toctree-l1"><a class="reference internal" href="weave/external-validity-measures.html">External Cluster Validity Measures</a></li>
<li class="toctree-l1"><a class="reference internal" href="weave/internal-validity-measures.html">Side Note: Internal <em>(In)Validity</em> Measures</a></li>
<li class="toctree-l1"><a class="reference internal" href="news.html">Changelog</a></li>
<li class="toctree-l1"><a class="reference internal" href="z_bibliography.html">References</a></li>
</ul>
</div>
</section>

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Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
Built with <a href="https://sphinx-doc.org/">Sphinx</a>
and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
</div>

<span class="sidebar-brand-text">
<a class="sidebar-brand" href="index.html">Clustering Benchmarks</a>
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Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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5 changes: 4 additions & 1 deletion docs/py-modindex.html
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
</div>

<span class="sidebar-brand-text">
<a class="sidebar-brand" href="index.html">Clustering Benchmarks</a>
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Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
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<span class="sidebar-brand-text">
<a class="sidebar-brand" href="index.html">Clustering Benchmarks</a>
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
<a class="sidebar-brand" href="../index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/clustbench.png" alt="Logo"/></a>
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<span class="sidebar-brand-text">
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<div class="sidebar-container">

<div class="sidebar-sticky">
<div class="sidebar-logo-container">
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<div class="sidebar-container">

<div class="sidebar-sticky">
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