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Update tools/fairy/fairy_cov.xml
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Co-authored-by: Björn Grüning <[email protected]>
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SantaMcCloud and bgruening authored Jan 10, 2025
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2 changes: 1 addition & 1 deletion tools/fairy/fairy_cov.xml
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<inputs>
<param name="contig" type="data" format="fasta,fasta.gz" label="Input fasta contig file" help="Input the RAW FASTA contig file. It can be gzip!"/>
<param name="bcsp_file" type="data" format="bcsp" label="Input the pre-sketched file (.bcsp file)" help="This file will be generated with the fairy sketch tool."/>
<param argument="--minimum-ani" type="integer" optional="true" min="0" max="100" value="95" label="Set minimum ANI" help="Set the minimum adjusted ANI for the coverage calculation. CARE: only adjust it when you know what it does!"/>
<param argument="--minimum-ani" type="integer" optional="true" min="0" max="100" value="95" label="Set minimum ANI" help="Set the minimum adjusted ANI for the coverage calculation"/>
<param argument="--min-number-kmers" type="integer" value="8" optional="true" label="Genome filter" help="Set a filter to filter out genomes with less then x k-mer sampled."/>
<param argument="-c" type="integer" value="50" optional="true" label="Set subsampling rate" help="This value does not interact with the .bcsp file which was used as input."/>
<param argument="-k" type="select" label="Select k-mer size" help="This value does not interact with the .bcsp file which was used as input.">
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