Update test data

griffithlab · Oct 1, 2024 · bab7164 · bab7164
1 parent dec5c87
commit bab7164
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Showing 4 changed files with 14 additions and 14 deletions.
diff --git a/tests/test_data/pvacseq_generate_protein_fasta/output.fasta b/tests/test_data/pvacseq_generate_protein_fasta/output.fasta
@@ -1,15 +1,15 @@
 >WT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP
-LPLPPPPLLPLLLLLLGASGG
+LPLPPPPLLPLLLLLLGASGGGG
 >MT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP
-LPLPPPPLLPLLPLLLLLGASGG
+LPLPPPPLLPLLPLLLLLGASGGGG
 >WT.2.RBM47.ENST00000381793.2.inframe_del.495-502AAAAAAAA/A
 DPASAAAAAAAAAAAAAAVIPTVSTPPP
 >MT.2.RBM47.ENST00000381793.2.inframe_del.495-502AAAAAAAA/A
 DPASAAAAAAAVIPTVSTPPP
 >WT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L
-VNSATLSRTLLAAAGGSSLQ
+VNSATLSRTLLAAAGGSSLQT
 >MT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L
-VNSATLSRTLLLAAAGGSSLQ
+VNSATLSRTLLLAAAGGSSLQT
 >WT.5.CECR2.ENST00000262608.8.missense.535R/H
 GRSGGSHVWTRSRDPEGSSRK
 >MT.5.CECR2.ENST00000262608.8.missense.535R/H

diff --git a/tests/test_data/pvacseq_generate_protein_fasta/output.tsv b/tests/test_data/pvacseq_generate_protein_fasta/output.tsv
@@ -1,10 +1,10 @@
 id	peptide_sequence	cterm_7mer_gravy_score	max_7mer_gravy_score	difficult_n_terminal_residue	c_terminal_cysteine	c_terminal_proline	cysteine_count	n_terminal_asparagine	asparagine_proline_bond_count
-WT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP	LPLPPPPLLPLLLLLLGASGG	1.057142857142857	3.2	False	False	False	0	False	0
-MT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP	LPLPPPPLLPLLPLLLLLGASGG	1.057142857142857	3.028571428571429	False	False	False	0	False	0
+WT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP	LPLPPPPLLPLLLLLLGASGGGG	-0.14285714285714288	3.2	False	False	False	0	False	0
+MT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP	LPLPPPPLLPLLPLLLLLGASGGGG	-0.14285714285714288	3.028571428571429	False	False	False	0	False	0
 WT.2.RBM47.ENST00000381793.2.inframe_del.495-502AAAAAAAA/A	DPASAAAAAAAAAAAAAAVIPTVSTPPP	-0.4	2.5285714285714285	False	False	True	0	False	0
 MT.2.RBM47.ENST00000381793.2.inframe_del.495-502AAAAAAAA/A	DPASAAAAAAAVIPTVSTPPP	-0.4	2.5285714285714285	False	False	True	0	False	0
-WT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L	VNSATLSRTLLAAAGGSSLQ	-0.04285714285714289	1.742857142857143	False	False	False	0	False	0
-MT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L	VNSATLSRTLLLAAAGGSSLQ	-0.04285714285714289	2.342857142857143	False	False	False	0	False	0
+WT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L	VNSATLSRTLLAAAGGSSLQT	-0.4000000000000001	1.742857142857143	False	False	False	0	False	0
+MT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L	VNSATLSRTLLLAAAGGSSLQT	-0.4000000000000001	2.342857142857143	False	False	False	0	False	0
 WT.5.CECR2.ENST00000262608.8.missense.535R/H	GRSGGSHVWTRSRDPEGSSRK	-2.2142857142857144	-0.31428571428571433	False	False	False	0	False	0
 MT.5.CECR2.ENST00000262608.8.missense.535R/H	GRSGGSHVWTHSRDPEGSSRK	-2.2142857142857144	-0.31428571428571433	False	False	False	0	False	0
 WT.6.USP18.ENST00000215794.7.missense.124A/V	RQKAVRPLELAYCLQKCNVPL	-0.28571428571428586	1.557142857142857	False	False	False	2	False	0

diff --git a/tests/test_data/pvacseq_generate_protein_fasta/output_mutant_only.fasta b/tests/test_data/pvacseq_generate_protein_fasta/output_mutant_only.fasta
@@ -1,9 +1,9 @@
 >MT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP
-LPLPPPPLLPLLPLLLLLGASGG
+LPLPPPPLLPLLPLLLLLGASGGGG
 >MT.2.RBM47.ENST00000381793.2.inframe_del.495-502AAAAAAAA/A
 DPASAAAAAAAVIPTVSTPPP
 >MT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L
-VNSATLSRTLLLAAAGGSSLQ
+VNSATLSRTLLLAAAGGSSLQT
 >MT.5.CECR2.ENST00000262608.8.missense.535R/H
 GRSGGSHVWTHSRDPEGSSRK
 >MT.6.USP18.ENST00000215794.7.missense.124A/V

diff --git a/tests/test_data/pvacseq_generate_protein_fasta/output_with_aggregated_tsv.fasta b/tests/test_data/pvacseq_generate_protein_fasta/output_with_aggregated_tsv.fasta
@@ -1,7 +1,7 @@
 >WT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP
-LPLPPPPLLPLLLLLLGASGG
+LPLPPPPLLPLLLLLLGASGGGG
 >MT.1.IGFBP2.ENST00000233809.4.inframe_ins.20L/LLP
-LPLPPPPLLPLLPLLLLLGASGG
+LPLPPPPLLPLLPLLLLLGASGGGG
 >WT.16.TRIOBP.ENST00000406386.3.FS.219GA/G
 EDTGGGGRSAGQHWARLRGE
 >MT.16.TRIOBP.ENST00000406386.3.FS.219GA/G
@@ -15,9 +15,9 @@ GMYQPCDDMDCLSDRCKILQV
 >MT.17.CACNA1I.ENST00000402142.3.missense.107C/Y
 GMYQPCDDMDYLSDRCKILQV
 >WT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L
-VNSATLSRTLLAAAGGSSLQ
+VNSATLSRTLLAAAGGSSLQT
 >MT.3.PRICKLE4.ENST00000458694.1.inframe_ins.287-288-/L
-VNSATLSRTLLLAAAGGSSLQ
+VNSATLSRTLLLAAAGGSSLQT
 >WT.13.ELFN2.ENST00000402918.2.missense.186P/L
 SLMVCELAGNPFNCECDLFGF
 >MT.13.ELFN2.ENST00000402918.2.missense.186P/L