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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

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  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 10 11

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 16 10

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 39 13

  4. protmapper protmapper Public

    Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 6 7

  5. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 7 5

  6. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 8 11

Repositories

Showing 10 of 50 repositories
  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    gyorilab/indra_db’s past year of commit activity
    Python 16 GPL-3.0 10 8 3 Updated Jan 10, 2025
  • ui_util Public

    This repo creates general utilities for our user interfaces.

    gyorilab/ui_util’s past year of commit activity
    Python 0 4 0 1 Updated Jan 9, 2025
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex’s past year of commit activity
    Jupyter Notebook 8 BSD-2-Clause 11 17 5 Updated Jan 8, 2025
  • gyorilab.github.io Public

    Gyori Lab website

    gyorilab/gyorilab.github.io’s past year of commit activity
    HTML 3 3 0 0 Updated Jan 8, 2025
  • covid-19 Public

    Scripts and other utilities relevant to the CORD-19 dataset

    gyorilab/covid-19’s past year of commit activity
    Jupyter Notebook 2 BSD-2-Clause 5 0 2 Updated Jan 7, 2025
  • panacea_indra Public

    INDRA applications for the DARPA Panacea project

    gyorilab/panacea_indra’s past year of commit activity
    HTML 1 2 0 1 Updated Jan 7, 2025
  • mira Public

    MIRA: machine-assisted modeling of dynamical systems

    gyorilab/mira’s past year of commit activity
    Jupyter Notebook 10 BSD-2-Clause 7 16 5 Updated Jan 3, 2025
  • outbreak_kg Public

    Knowledge graphs for disease outbreak scenarios

    gyorilab/outbreak_kg’s past year of commit activity
    Python 0 BSD-2-Clause 2 0 0 Updated Dec 13, 2024
  • mapnet Public

    Algorithms for semantic mapping between different ontologies

    gyorilab/mapnet’s past year of commit activity
    0 BSD-2-Clause 1 0 2 Updated Nov 6, 2024
  • indra_spine Public
    gyorilab/indra_spine’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 30, 2024
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