tests.yml

name: Tests

on: [push, pull_request]

jobs:
  build:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v2
    - uses: actions/cache@v2
      with:
        path: ~/.cache/pip
        key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
        restore-keys: |
          ${{ runner.os }}-pip-
    - name: Set up Python 3.7
      uses: actions/setup-python@v1
      with:
        python-version: 3.7
    - name: Install dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libstdc++6 graphviz python3-dev libgraphviz-dev pkg-config
        python -m pip install --upgrade pip
        pip install -e .[tests]
        pip install termcolor cachetools httpx
        git clone https://github.com/indralab/depmap_analysis.git
    - name: Run unit tests
      run: |
        export NOSEATTR="!notravis"
        export PYTHONPATH=$PYTHONPATH:depmap_analysis
        nosetests -v -a $NOSEATTR indra_network_search/tests