chore: Pin zarr-python<3

hms-dbmi · Jan 24, 2025 · 3b31d33 · 3b31d33
1 parent d70b0c9
commit 3b31d33
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Showing 6 changed files with 1,711 additions and 43 deletions.
diff --git a/python/notebooks/IDR_example.ipynb b/python/notebooks/IDR_example.ipynb
@@ -79,13 +79,6 @@
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
    "version": "3.12.3"
-  },
-  "widgets": {
-   "application/vnd.jupyter.widget-state+json": {
-    "state": {},
-    "version_major": 2,
-    "version_minor": 0
-   }
   }
  },
  "nbformat": 4,

diff --git a/python/notebooks/getting_started.ipynb b/python/notebooks/getting_started.ipynb
@@ -106,17 +106,6 @@
     "# view canvas above"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "scrolled": true
-   },
-   "outputs": [],
-   "source": [
-    "run_vizarr([astronaut_img, noise])"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -181,6 +170,27 @@
     ")\n",
     "viewer"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
@@ -199,14 +209,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.3"
-  },
-  "widgets": {
-   "application/vnd.jupyter.widget-state+json": {
-    "state": {},
-    "version_major": 2,
-    "version_minor": 0
-   }
+   "version": "3.12.7"
   }
  },
  "nbformat": 4,

diff --git a/python/notebooks/mandelbrot.ipynb b/python/notebooks/mandelbrot.ipynb
@@ -204,13 +204,6 @@
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
    "version": "3.12.3"
-  },
-  "widgets": {
-   "application/vnd.jupyter.widget-state+json": {
-    "state": {},
-    "version_major": 2,
-    "version_minor": 0
-   }
   }
  },
  "nbformat": 4,

diff --git a/python/notebooks/spatial_transformations.ipynb b/python/notebooks/spatial_transformations.ipynb
@@ -132,13 +132,6 @@
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
    "version": "3.12.3"
-  },
-  "widgets": {
-   "application/vnd.jupyter.widget-state+json": {
-    "state": {},
-    "version_major": 2,
-    "version_minor": 0
-   }
   }
  },
  "nbformat": 4,

diff --git a/python/pyproject.toml b/python/pyproject.toml
@@ -5,10 +5,10 @@ build-backend = "hatchling.build"
 [project]
 name = "vizarr"
 version = "0.1.0"
-dependencies = ["anywidget", "zarr"]
+dependencies = ["anywidget", "zarr<3"]
 
-[project.optional-dependencies]
-dev = ["watchfiles", "jupyterlab"]
+[dependency-groups]
+dev = ["watchfiles", "jupyterlab", "scikit-image"]
 
 # automatically add the dev feature to the default env (e.g., hatch shell)
 [tool.hatch.envs.default]