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1. QuantSysBio/invitroSPI QuantSysBio/invitroSPI Public

   Spliced peptide identification from in vitro digestions of polypeptides with purified proteasomes

   R 11 2

2. QuantSysBio/aSPIRE QuantSysBio/aSPIRE Public

   aSPIRE is a tool for the processing of peptide abundances using label-free quantification mass spectrometry

   R 11

3. kinetic-network-inference kinetic-network-inference Public

   inference of edge weights using interpretable neural ODE

   Julia 4

4. pigeons-minimal pigeons-minimal Public

   minimal version of graph-learning predictor for proteasome-catalysed peptide splicing and hydrolysis

   Python 4