code_path is not used anymore #11

	name: Docker

	on:
	push:
	branches: [ "main" ]
	paths:
	- 'config/**'
	- 'workflows/**'

	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	permissions:
	contents: read
	packages: write

	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	with:
	submodules: recursive

	- name: create environment with mamba
	uses: conda-incubator/setup-miniconda@v2
	with:
	mamba-version: "*"
	channels: conda-forge,bioconda,defaults
	auto-activate-base: false
	activate-environment: snakemake
	environment-file: environment.yml

	- name: check solution
	run: \|
	mamba env export

	- name: Make the dag
	run: \|
	snakemake --dag \| dot -Tsvg > dag.svg

	- name: Check for changes
	id: check_changes
	run: \|
	if [[ -n "$(git diff --exit-code)" ]]; then
	echo "Changes detected."
	echo "::set-output name=has_changes::true"
	else
	echo "No changes detected."
	echo "::set-output name=has_changes::false"
	fi

	# Commit and Push Changes
	- name: Commit and Push Changes
	if: steps.check_changes.outputs.has_changes == 'true'
	run: \|
	# configure user
	git config --global user.name "${{ github.actor }}"
	git config --global user.email "${{ github.actor }}@users.noreply.github.com"

	# stage any file changes to be committed
	git add .

	# make commit with staged changes
	git commit -m 'update dag'

	# push the commit back up to source GitHub repository
	git push

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