pqtl_pipeline

Requirements

see environment.yml and Makefile

Getting started

• git clone --recurse-submodules https://github.com/ht-diva/pqtl_pipeline.git
• cd pqtl_pipeline
• adapt the submit.sbatch and config/config.yaml files to your environment
• sbatch submit.sbatch

DAG

check the dag

Credits

The fine mapping branch of this pipeline has been realized by Michele Filosi, see more at https://github.com/EuracBiomedicalResearch/finemap_pipeline