defining sentinel files as output #29

ht-diva · Dec 5, 2024 · 88daa42 · 88daa42
1 parent a3ec8a4
commit 88daa42
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -25,4 +25,5 @@ rule all:
         expand(ws_path("break/{seqid}_loci.csv"), seqid=analytes.seqid),
         ws_path("break/collected_loci_excluding_mhc.csv"),
         ws_path("cojo/collected_credible_sets.csv"),
-        ws_path("coloc/master_coloc.txt"),
+        expand(ws_path("coloc/{seqid}_master_file.sentinel"), seqid=analytes.seqid),
+        expand(ws_path("coloc/chr{chr_cs}.sentinel"), chr_cs = range(19, 20))