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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 178 repositories
  • hra-hubmap-kpmp-integration Public

    [WIP] repo for exploring HRA HuBMAP + KPMP Integration

    hubmapconsortium/hra-hubmap-kpmp-integration’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 25, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 2 84 3 Updated Jan 24, 2025
  • soft-assay-rules Public

    Rules for "soft" assay classification, and tools to generate and test them.

    hubmapconsortium/soft-assay-rules’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jan 24, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 31 Updated Jan 24, 2025
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 5 79 17 Updated Jan 24, 2025
  • entity-api Public

    A set of web service calls to return information about HuBMAP entities

    hubmapconsortium/entity-api’s past year of commit activity
    Python 3 MIT 1 47 1 Updated Jan 24, 2025
  • hubmapconsortium/azimuth-annotate’s past year of commit activity
    R 1 GPL-3.0 1 2 2 Updated Jan 24, 2025
  • ingest-api Public
    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 19 2 Updated Jan 24, 2025
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers’s past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 29 Updated Jan 24, 2025
  • hra-workflows-runner Public

    hra-workflows-runner: Pipeline to download, annotate, and summarize experimental data using hra-workflows

    hubmapconsortium/hra-workflows-runner’s past year of commit activity
    JavaScript 0 MIT 0 8 1 Updated Jan 24, 2025

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