fix a bug for VNTR in INS gene. fix #21

mehrdadbakhtiari · Jun 19, 2019 · d208428 · d208428
1 parent 798e211
commit d208428
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/advntr/vntr_finder.py b/advntr/vntr_finder.py
@@ -674,7 +674,7 @@ def find_repeat_count_from_alignment_file(self, alignment_file, unmapped_filtere
         else:
             exact_genotype_log = 'None'
         logging.info('RU count lower bounds: %s' % exact_genotype_log)
-        if self.reference_vntr.id not in settings.LONG_VNTRS and average_coverage is None:
+        if average_coverage is None:
             return exact_genotype
 
         pattern_occurrences = sum(flanking_repeats) + sum(covered_repeats)