Skip to content

Commit

Permalink
Merge pull request #615 from monarch-initiative/issue-322-oralcontrac…
Browse files Browse the repository at this point in the history 
…eptive

Add terms related to oral contraceptive agent therapy Close #322
  • Loading branch information
Leigh Carmody authored Nov 13, 2023
2 parents b1c47fa + 52d5ce8 commit 406c0de
Show file tree
Hide file tree
Showing 7 changed files with 101 additions and 7,493 deletions.
11 changes: 9 additions & 2 deletions src/ontology/maxo-edit.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4435,10 +4435,10 @@ AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/MAXO_0000424
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/MAXO_0000424> "NCIT:C16809")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://www.geneontology.org/formats/oboInOwl#hasSynonymType>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "MRI scan for therapeutics")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/maxo#ABBREVIATION>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "NMRI")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "nuclear magnetic resonance imaging for medical therapy")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/maxo#ABBREVIATION>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "therapeutic MRI")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "clinical magnetic resonance imaging procedure")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "medical magnetic resonance imaging procedure")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "nuclear magnetic resonance imaging for medical therapy")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/maxo#ABBREVIATION>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0000424> "therapeutic MRI")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MAXO_0000424> "magnetic resonance imaging procedure"@en)
SubClassOf(<http://purl.obolibrary.org/obo/MAXO_0000424> <http://purl.obolibrary.org/obo/MAXO_0000005>)

Expand Down Expand Up @@ -11669,6 +11669,13 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.ob
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN:978-0-12-374203-2") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0001499> "A drug or pharmaceutical agent tht is used to attempt to prevent or reverse neuronal damage, thereby retaining physiological function.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0001500> "A drug or pharmaceutical agent that is developed to treat a rare medical condition.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0001501> "A drug or substance used as therapy to inhibit 4-hydroxyphenylpyruvate hydroxylase.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010125> "Use of agent or drug to regulate reproduction.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010126> "The use of an agent or drug to interupt pregnancy after implantation.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010127> "Use of drug or agent to suppress uterine contractions thereby suppressing premature labor and birth.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010128> "Use of a drug or agent to prevent or reduce probability of contraception.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010129> "Use of drug or agent with contraceptive activity in females.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010130> "Use of a compound or agent to block ovulation and prevent occurance of pregnancy.")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/MAXO_0010130> "The use of these drugs or agents have many other uses beyond pregnancy control.")
AnnotationAssertion(dce:date <http://purl.obolibrary.org/obo/MAXO_0035005> "2023-04-11T12:00:00Z")
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/MAXO_0035005> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/MAXO_0035005> <https://orcid.org/0000-0001-7941-2961>)
Expand Down
9 changes: 8 additions & 1 deletion src/ontology/maxo-idranges.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ Datatype: idrange:1
allocatedto: "Leigh Carmody"

EquivalentTo:
xsd:integer[> 0000001 , <= 0020000]
xsd:integer[> 0001201 , <= 0010000]


Datatype: idrange:2
Expand Down Expand Up @@ -71,7 +71,14 @@ Datatype: idrange:5

EquivalentTo:
xsd:integer[> 0035001 , <= 0040000]

Datatype: idrange:6

Annotations:
allocatedto: "DOSDP Templates"

EquivalentTo:
xsd:integer[> 0010120 , <= 0020000]
Datatype: xsd:integer
Datatype: rdf:PlainLiteral

6 changes: 6 additions & 0 deletions src/ontology/reports/maxo-base.owl-obo-report.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -589,6 +589,12 @@ WARN missing_superclass MAXO:0010040 rdfs:subClassOf
WARN missing_superclass MAXO:0010041 rdfs:subClassOf
WARN missing_superclass MAXO:0010042 rdfs:subClassOf
WARN missing_superclass MAXO:0010043 rdfs:subClassOf
WARN missing_superclass MAXO:0010125 rdfs:subClassOf
WARN missing_superclass MAXO:0010126 rdfs:subClassOf
WARN missing_superclass MAXO:0010127 rdfs:subClassOf
WARN missing_superclass MAXO:0010128 rdfs:subClassOf
WARN missing_superclass MAXO:0010129 rdfs:subClassOf
WARN missing_superclass MAXO:0010130 rdfs:subClassOf
WARN missing_superclass MAXO:0010200 rdfs:subClassOf
WARN missing_superclass MAXO:0010201 rdfs:subClassOf
WARN missing_superclass MAXO:0010202 rdfs:subClassOf
Expand Down
6 changes: 6 additions & 0 deletions src/ontology/reports/maxo-edit.owl-obo-report.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -589,6 +589,12 @@ WARN missing_superclass MAXO:0010040 rdfs:subClassOf
WARN missing_superclass MAXO:0010041 rdfs:subClassOf
WARN missing_superclass MAXO:0010042 rdfs:subClassOf
WARN missing_superclass MAXO:0010043 rdfs:subClassOf
WARN missing_superclass MAXO:0010125 rdfs:subClassOf
WARN missing_superclass MAXO:0010126 rdfs:subClassOf
WARN missing_superclass MAXO:0010127 rdfs:subClassOf
WARN missing_superclass MAXO:0010128 rdfs:subClassOf
WARN missing_superclass MAXO:0010129 rdfs:subClassOf
WARN missing_superclass MAXO:0010130 rdfs:subClassOf
WARN missing_superclass MAXO:0010200 rdfs:subClassOf
WARN missing_superclass MAXO:0010201 rdfs:subClassOf
WARN missing_superclass MAXO:0010202 rdfs:subClassOf
Expand Down
8 changes: 7 additions & 1 deletion src/patterns/data/manual/pharmacotherapy_chemicalrole.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -150,4 +150,10 @@ MAXO:0001476 somatostatin recepter agonist therapy CHEBI:24431 chemical entity C
MAXO:0001498 prodrug therapy CHEBI:24431 chemical entity CHEBI:50266 prodrug http://orcid.org/0000-0001-7941-2961 2023-08-15T11:00:00Z
MAXO:0001499 neuroprotective agent therapy CHEBI:24431 chemical entity CHEBI:63726 neuroprotective agent http://orcid.org/0000-0001-7941-2961 2023-08-15T11:00:00Z
MAXO:0001500 orphan drug therapy CHEBI:24431 chemical entity CHEBI:71031 orphan drug http://orcid.org/0000-0001-7941-2961 2023-08-15T11:00:00Z orphan drug treatment
MAXO:0001501 HPPD inhibitor therapy CHEBI:24431 chemical entity CHEBI:38317 EC 1.13.11.27 (4-hydroxyphenylpyruvate dioxygenase) inhibitor http://orcid.org/0000-0001-7941-2961 2023-08-18T11:00:00Z 4-hydroxyphenylpyruvate hydroxylase inhibitor therapy
MAXO:0001501 HPPD inhibitor therapy CHEBI:24431 chemical entity CHEBI:38317 EC 1.13.11.27 (4-hydroxyphenylpyruvate dioxygenase) inhibitor http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z 4-hydroxyphenylpyruvate hydroxylase inhibitor therapy
MAXO:0010125 reproductive control agent therapy CHEBI:24431 chemical entity CHEBI:50689 reproductive control drug http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z
MAXO:0010126 aborifacient agent therapy CHEBI:24431 chemical entity CHEBI:50691 abortifacient http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z
MAXO:0010127 tocolytic agent therapy CHEBI:24431 chemical entity CHEBI:66993 tocolytic agent http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z
MAXO:0010128 contraceptive agent therapy CHEBI:24431 chemical entity CHEBI:49323 contraceptive drug http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z
MAXO:0010129 female contraceptive agent therapy CHEBI:24431 chemical entity CHEBI:49324 female contraceptive drug http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z
MAXO:0010130 oral contraceptive agent therapy CHEBI:24431 chemical entity CHEBI:49325 oral contraceptive http://orcid.org/0000-0001-7941-2961 2023-11-109T11:00:00Z birth control therapy
Loading

0 comments on commit 406c0de

Please sign in to comment.