Merge branch 'master' of https://github.com/nasa/GeneLab_Data_Processing

into update_DPPD_7101-F
nasa · Mar 23, 2023 · 84182c4 · 84182c4
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diff --git a/RNAseq/Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md b/RNAseq/Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md
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 # GeneLab bioinformatics processing pipeline for Illumina RNA-sequencing data
 
-> **This page holds an overview and instructions for how GeneLab processes RNAseq datasets. Exact processing commands and GL-DPPD-7101 version used for specific datasets are available in the [GLDS_Processing_Scripts](../GLDS_Processing_Scripts) directory and processed data output files are provided in the [GeneLab Data Systems (GLDS) repository](https://genelab-data.ndc.nasa.gov/genelab/projects).**  
+> **This page holds an overview and instructions for how GeneLab processes RNAseq datasets. Exact processing commands, GL-DPPD-7101 version used, and processed data output files for specific datasets are provided in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).**  
 
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diff --git a/RNAseq/Workflow_Documentation/README.md b/RNAseq/Workflow_Documentation/README.md
@@ -2,13 +2,13 @@
 
 > **Starting with version F of the GeneLab RNA-seq consensus processing pipeline (RCP),
 [`GL-DPPD-7101-F.md`](../Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md),
-GeneLab has wrapped each step of the pipeline into a workflow with validation and verification of output files built in after each step. The table below lists (and links to) each RCP version and the corresponding workflow subdirectory, the current RCP/workflow implementation is indicated. Each workflow subdirectory contains information about the workflow along with instructions for installation and usage. Exact workflow run info and RCP version used to process specific datasets that have been released are available in the [GLDS_Processing_Scripts](../GLDS_Processing_Scripts) directory.**  
+GeneLab has wrapped each step of the pipeline into a workflow with validation and verification of output files built in after each step. The table below lists (and links to) each RCP version and the corresponding workflow subdirectory, the current RCP/workflow implementation is indicated. Each workflow subdirectory contains information about the workflow along with instructions for installation and usage. Exact workflow run info and RCP version used to process specific datasets that have been released are available in the \*nextflow_processing_info.txt file on the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/), which can be found under 'Files' -> 'GeneLab Processed RNA-Seq Files' -> 'Supplemental Materials'.**  
 
 ## RCP Version and Corresponding Workflow
 
 |Pipeline Version|Current Workflow Version (for respective pipeline version)|Nextflow Version|
 |:---------------|:---------------------------------------------------------|:---------------|
-|*[GL-DPPD-7101-F.md](../Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md)|[1.0.3](NF_RCP-F)|22.10.1|
+|*[GL-DPPD-7101-F.md](../Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md)|[NF_RCP-F_1.0.3](NF_RCP-F)|22.10.1|
 
 *Current GeneLab Pipeline/Workflow Implementation