Cleanup broken files (#20)

neuro-galaxy · Nov 11, 2024 · dab35d0 · dab35d0
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diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-# 🔥 torch_brain
+# torch_brain
 
 **torch_brain** is a Python library for various deep learning models designed for neuroscience.
 
@@ -16,12 +16,6 @@ used as follows:
 pip install -e ".[xformers]"
 ```
 
-## Documentation
-> [!WARNING]  
-> The docs are hosted publically for convenience, please do not share the link.
-
-You can find the documentation for this package [here](https://chic-dragon-bc9a04.netlify.app/).
-
 ## Contributing
 If you are planning to contribute to the package, you can install the package in
 development mode by running the following command:

diff --git a/configs/dataset/allen_neuropixels.yaml b/configs/dataset/allen_neuropixels.yaml
diff --git a/configs/dataset/allen_neuropixels_dg.yaml b/configs/dataset/allen_neuropixels_dg.yaml
diff --git a/configs/dataset/allen_neuropixels_ns.yaml b/configs/dataset/allen_neuropixels_ns.yaml
diff --git a/configs/dataset/churchland_shenoy_neural_2012.yaml b/configs/dataset/churchland_shenoy_neural_2012.yaml
diff --git a/configs/dataset/gillon_richards_responses_2023.yaml b/configs/dataset/gillon_richards_responses_2023.yaml
diff --git a/configs/dataset/mc_maze_small.yaml b/configs/dataset/mc_maze_small.yaml
@@ -1,8 +1,8 @@
 - selection:
-    - dandiset: "mc_maze_small"
+    - brainset: "mc_maze_small"
   config:
     multitask_readout:
-      - decoder_id: ARMVELOCITY2D
+      - readout_id: arm_velocity_2d
         subtask_weights:
           REACHING.RANDOM: 1.0
           REACHING.HOLD: 1.0
@@ -11,5 +11,7 @@
           REACHING.INVALID: 1.0
           REACHING.OUTLIER: 0.1
         metrics:
-          - metric: r2
+          - metric:
+              _target_: torchmetrics.R2Score
+              num_outputs: 2
             task: REACHING
diff --git a/configs/dataset/perich_miller_population_2018.yaml b/configs/dataset/perich_miller_population_2018.yaml
@@ -91,7 +91,9 @@
           REACHING.INVALID: 0.1
           REACHING.OUTLIER: 0.0
         metrics:
-          - metric: r2
+          - metric:
+              _target_: torchmetrics.R2Score
+              num_outputs: 2
             task: REACHING
             subtask: REACHING.REACH
 
@@ -131,6 +133,8 @@
           REACHING.INVALID: 0.1
           REACHING.OUTLIER: 0.0
         metrics:
-          - metric: r2
+          - metric:
+              _target_: torchmetrics.R2Score
+              num_outputs: 2
             task: REACHING
             subtask: REACHING.RANDOM