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@keszybz keszybz released this 28 Oct 19:34
· 114 commits to master since this release
v3.2
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keszybz Zbigniew Jędrzejewski-Szmek
GPG key ID: C54CA336CFEB557E
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d704b0f

A significant bug in propensity calculation is fixed: propensities were not multiplied by 0.602 (the conversion constant from concentrations to particle numbers). In effect, all reactions were too fast.

HDF5 format is slightly changed:

  • various metadata are saved as attributes, not as separate tables
  • compression is enabled for all arrays, this gives large space savings
  • shuffle filter is enabled, giving more space savings

Python support code can now display the diff between configuration of two .h5 files, or an .h5 file and an .xml file, or two .xml files. XML includes are automatically processed.
Molecule names can be specified using globs.

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