Hide BiopythonDeprecationWarnings when reading certain sequence files #3221

Job	Run time
test (python=3.9 biopython=1.80)	13m 12s
test (python=3.9 biopython=1.82)	13m 25s
test (python=3.9 biopython=latest)	13m 21s
test (python=3.10 biopython=1.80)	13m 56s
test (python=3.10 biopython=1.82)	13m 49s
check-docs	39s
test (python=3.10 biopython=latest)	13m 31s
test (python=3.11 biopython=1.80)	13m 20s
mypy	54s
test (python=3.11 biopython=1.82)	13m 41s
test (python=3.11 biopython=latest)	13m 26s
test (python=3.12 biopython=1.82)	21m 1s
pathogen-repo-ci (dengue)	2m 48s
test (python=3.12 biopython=latest)	20m 41s
pathogen-repo-ci (lassa)	8m 0s
pathogen-repo-ci-v0 (avian-flu)	1m 1s
pathogen-repo-ci (measles)	1m 22s
pathogen-repo-ci-v0 (ebola)	1m 1s
pyright	16s
pathogen-repo-ci (mpox)	1m 17s
pathogen-repo-ci-v0 (mumps)	1m 4s
pathogen-repo-ci (oropouche)	1m 34s
pathogen-repo-ci-v0 (ncov)	1m 10s
pathogen-repo-ci (rabies)	2m 28s
pathogen-repo-ci-v0 (rsv)	8m 51s
pathogen-repo-ci (seasonal-cov)	1m 36s
pathogen-repo-ci (wnv)	1m 5s
pathogen-repo-ci (yellow-fever)	4m 15s
pathogen-repo-ci-v0 (seasonal-flu)	1m 18s
pathogen-repo-ci (zika)	1m 2s
pathogen-repo-ci-v0 (tb)	1m 25s
build-docs / build	2m 21s
codecov	12s
release	0s
rebuild-docker-image	0s
	3h 29m 2s

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