Skip to content

Lumos v0.0.4
Compare
Choose a tag to compare
@tlp19 tlp19 released this 19 Aug 07:17
· 16 commits to main since this release
v0.0.4
4f8f8b1
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Description

Lumos v0.0.4 release by @tlp19 in #2

This version provides some new simple functionalities to the program as well as some fixes.

Changelog

New functionalities:

  • New 'sites' scope for Cell Painting mode (outputs one cell-painted image per site)
  • Ability to generate cell-painted images for only one well (for both 'wells' and 'sites' scopes)
  • Option to choose the output image file format (either JPEG or PNG)
  • Added functionality to display the compound identifier of each well, which is parsed from the platemap of the plate (columns to be parsed can be configured)

Improvements:

  • Code refactorings in picasso.py
  • Improved high-level tests that now rely on the CLI
  • Calibration of cell-painting image-tuning parameters on DMSO-only plate
  • Improved documentation for developers in readme-dev.md

Fixes:

  • Fix intensity overflow when multiplying 8-bit images by channel coefficients (in both QC and CP)
  • Fix typos in codebase and readmes

Miscellaneous:

  • Code linting
  • Updated HTML documentation
  • Improved CLI help menus and dialogs (with color-coding)

Contributors

tlp19
Assets 3
Loading