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Merge branch 'master' of https://github.com/nwnoll/taxalogue
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nwnoll committed Jun 17, 2024
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Expand Up @@ -30,7 +30,7 @@ At last, *taxalogue* needs time. Especially the sequence download of species-ric

3. Change to the directory where you unzipped the source code

cd taxalogue-v1.0.0
cd taxalogue-1.0.0

4. Install all the dependencies

Expand All @@ -46,7 +46,7 @@ At last, *taxalogue* needs time. Especially the sequence download of species-ric
# bundle install


5. Download records from up to three different source databases, for BOLD manually download the [datapackages](https://boldsystems.org/index.php/datapackages)
5. Download records from up to three different source databases, for BOLD manually download the [datapackages](https://boldsystems.org/index.php/datapackages). Since taxalogue downloads the GenBank Release files for the specified taxon, it might require a lot of disk space. If you do not have sufficient disk space, consider using only BOLD (by downloading the datapackage) and GBOL with `bundle exec ruby taxalogue.rb --taxon Arthropoda download --gbol`

# Since BOLD now offers to download a snapshot of the current database, it is recommended to use it
# The datapackages are listed at https://boldsystems.org/index.php/datapackages
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