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@sebastianduesing
sebastianduesing committed Jan 16, 2025
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Showing 4 changed files with 52 additions and 19 deletions.
2 changes: 1 addition & 1 deletion src/ontology/OntoFox_outputs/CL_imports.owl
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000000"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000066"/>
<obo:IAO_0000111>mesothelial cell</obo:IAO_0000111>
<obo:IAO_0000115>A flattened epithelial cell of mesenchymal origin that lines the serous cavity.</obo:IAO_0000115>
<obo:IAO_0000115>A flat, squamous-like epithelial cell of mesodermal origin. It forms the mesothelium, which lines the body&apos;s serous cavities including the pleural, peritoneal, and pericardial spaces. This cell plays a crucial role in synthesizing and secreting lubricants, such as glycosaminoglycans and surfactants, which minimize friction between adjacent tissues during movement.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<rdfs:label>mesothelial cell</rdfs:label>
</owl:Class>
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9 changes: 4 additions & 5 deletions src/ontology/OntoFox_outputs/GO_imports.owl
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<!-- http://purl.obolibrary.org/obo/GO_0000785 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000785">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0005575"/>
<obo:IAO_0000111>chromatin</obo:IAO_0000111>
<obo:IAO_0000115>The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
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<!-- http://purl.obolibrary.org/obo/GO_0001172 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0001172">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009987"/>
<obo:IAO_0000111>RNA-templated transcription</obo:IAO_0000111>
<obo:IAO_0000115>The synthesis of an RNA transcript from an RNA template.</obo:IAO_0000115>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0003964">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003824"/>
<obo:IAO_0000111>RNA-directed DNA polymerase activity</obo:IAO_0000111>
<obo:IAO_0000115>Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3&apos;- end of a DNA strand by one deoxynucleotide at a time.</obo:IAO_0000115>
<obo:IAO_0000115>Catalysis of the reaction: a 2&apos;-deoxyribonucleoside 5&apos;-triphosphate + DNA(n) = diphosphate + DNA(n+1); RNA-template-directed extension of the 3&apos;-end of a DNA strand by one deoxynucleotide at a time.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>RNA-directed DNA polymerase activity</rdfs:label>
</owl:Class>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0003997">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003824"/>
<obo:IAO_0000111>acyl-CoA oxidase activity</obo:IAO_0000111>
<obo:IAO_0000115>Catalysis of the reaction: acyl-CoA + O2 = trans-2,3-dehydroacyl-CoA + hydrogen peroxide.</obo:IAO_0000115>
<obo:IAO_0000115>Catalysis of the reaction: a 2,3-saturated acyl-CoA + O2 = a (2E)-enoyl-CoA + H2O2.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>acyl-CoA oxidase activity</rdfs:label>
</owl:Class>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0034061">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003824"/>
<obo:IAO_0000111>DNA polymerase activity</obo:IAO_0000111>
<obo:IAO_0000115>Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a nucleic acid template and a 3&apos;hydroxyl group.</obo:IAO_0000115>
<obo:IAO_0000115>Catalysis of the reaction: a 2&apos;-deoxyribonucleoside 5&apos;-triphosphate + DNA(n) = diphosphate + DNA(n+1).</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>DNA polymerase activity</rdfs:label>
</owl:Class>
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2 changes: 2 additions & 0 deletions src/ontology/OntoFox_outputs/NCBITaxon_imports.owl
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<obo:IAO_0000118>Epstein-Barr virus</obo:IAO_0000118>
<obo:IAO_0000118>Epstein-Barr virus EBV</obo:IAO_0000118>
<obo:IAO_0000118>Human herpesvirus 4</obo:IAO_0000118>
<obo:IAO_0000118>Human herpesvirus 4 (Epstein-Barr virus)</obo:IAO_0000118>
<obo:IAO_0000118>Human herpesvirus type 4</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label>human gammaherpesvirus 4</rdfs:label>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2732406">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2559587"/>
<obo:IAO_0000111>Kitrinoviricota</obo:IAO_0000111>
<obo:IAO_0000118>Tombus-Noda-like virus sp.</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label>Kitrinoviricota</rdfs:label>
</owl:Class>
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58 changes: 45 additions & 13 deletions src/ontology/OntoFox_outputs/PATO_imports.owl
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<!-- http://purl.obolibrary.org/obo/BFO_0000020 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000020">
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PATO_0000001 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:IAO_0000111>quality</obo:IAO_0000111>
<obo:IAO_0000115>A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>quality</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PATO_0000011 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000011">
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<!-- http://purl.obolibrary.org/obo/PATO_0000033 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000033">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002182"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
<obo:IAO_0000111>concentration of</obo:IAO_0000111>
<obo:IAO_0000115>A quality inhering in a substance by virtue of the amount of the bearer&apos;s there is mixed with another substance.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
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<!-- http://purl.obolibrary.org/obo/PATO_0000070 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000070">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0103000"/>
<obo:IAO_0000111>amount</obo:IAO_0000111>
<obo:IAO_0000115>The number of entities of this type that are part of the whole organism.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>amount</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PATO_0000117 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000117">
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<!-- http://purl.obolibrary.org/obo/PATO_0002182 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002182">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000111>molecular quality</obo:IAO_0000111>
<obo:IAO_0000115>A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>molecular quality</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PATO_0002198 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002198">
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<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>quality of interaction of a substance with electromagnetic radiation</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PATO_0103000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0103000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<obo:IAO_0000111>quantitative</obo:IAO_0000111>
<obo:IAO_0000115>A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label>quantitative</rdfs:label>
</owl:Class>
</rdf:RDF>


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