Merge pull request #1632 from obi-ontology/fix-microbiology-datum-terms

mistake in textual definition of microbiology data terms
obi-ontology · Dec 14, 2022 · c6811d8 · c6811d8
2 parents 038253f + add0684
commit c6811d8
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diff --git a/src/ontology/modules/specimen-assay-data.owl b/src/ontology/modules/specimen-assay-data.owl
@@ -223,7 +223,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002649"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a blood microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a blood microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -261,7 +261,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003039"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a feces microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a feces microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -299,7 +299,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003286"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a urine microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a urine microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -337,7 +337,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003242"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of an induced sputum microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of an induced sputum microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -375,7 +375,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003240"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a cerebrospinal fluid microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a cerebrospinal fluid microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -394,7 +394,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003233"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of an endotracheal aspirate assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of an endotracheal aspirate assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -413,7 +413,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003241"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of an endotracheal tube aspirate microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of an endotracheal tube aspirate microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -432,7 +432,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003282"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a lung microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a lung microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -451,7 +451,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003285"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a nasopharyngeal or oropharyngeal swab microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a nasopharyngeal or oropharyngeal swab microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -470,7 +470,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003283"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a pleural fluid microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a pleural fluid microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -489,7 +489,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003238"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of an umbilical cord blood assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of an umbilical cord blood assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -508,7 +508,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003284"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of an umbilical cord blood microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of an umbilical cord blood microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1428</obo:IAO_0000233>
@@ -981,7 +981,7 @@
                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003381"/>
             </owl:Restriction>
         </rdfs:subClassOf>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification assay that is the specified output of a placental blood microbiology assay.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism identification datum that is the specified output of a placental blood microbiology assay.</obo:IAO_0000115>
         <obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">John Judkins</obo:IAO_0000117>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VEuPathDB</obo:IAO_0000119>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://github.com/obi-ontology/obi/issues/1297</obo:IAO_0000233>