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Co-authored-by: Matt Thompson <[email protected]>
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j-wags and mattwthompson authored Oct 31, 2023
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Expand Up @@ -22,6 +22,6 @@ At the same time, when starting OpenFF, we wanted to ensure that someday, we cou

Long-term, we hope our science and infrastructure will lead to a vital ecosystem of force fields, whether they are developed by OpenFF or elsewhere. Perhaps innovations will lead to families of force fields, ranging from conventional LJ 12-6 fixed-charge force fields, to simply adding on direct polarization, to off-site charges, multipoles, cross-terms, and advanced functional forms. And perhaps these force fields will each stake out their own domains of applicability and relative benefit vs computational cost ratios, so that researchers targeting a specific application will be able to choose the option which is going to work best for their particular application given the relative cost/benefit analysis. This would be a huge success, regardless of who gets to produce these force fields. And that’s the future I hoped for when starting OpenFF – one where I can use reliable force fields in my research without having to worry that I’ll run into force field problems and get stuck.

So, in this future where I no longer work on force field development, what would I do? One of my group’s major focuses is in the area of binding free energy calculations and molecular simulations applied to early stage drug discovery, and there remains a tremendous amount of science and engineering to do in that area. Our recent Separated Topologies method gives a flavor of what we want to do in that area. But I’d also like to further explore mixing MD and Monte Carlo for enhanced sampling, picking back up with our BLUES project and derivatives to make binding free energy calculations much more efficient and reliable and fix leading sampling problems. There’s just so much work left to be done in that space. And if, somehow, we get to the point where binding prediction becomes as reliable as we would like, there remains plenty of work to be done both in applications to help guide early stage drug discovery (including in academia) and in other areas like computational library design. I have my work cut out for me, even without research on force fields.
So, in this future where I no longer work on force field development, what would I do? One of my group’s major focuses is in the area of binding free energy calculations and molecular simulations applied to early stage drug discovery, and there remains a tremendous amount of science and engineering to do in that area. Our recent [Separated Topologies](https://pubs.acs.org/doi/full/10.1021/acs.jctc.3c00282) method gives a flavor of what we want to do in that area. But I’d also like to further explore mixing MD and Monte Carlo for enhanced sampling, picking back up with our BLUES project and derivatives to make binding free energy calculations much more efficient and reliable and fix leading sampling problems. There’s just so much work left to be done in that space. And if, somehow, we get to the point where binding prediction becomes as reliable as we would like, there remains plenty of work to be done both in applications to help guide early stage drug discovery (including in academia) and in other areas like computational library design. I have my work cut out for me, even without research on force fields.

Still, perhaps sadly, there remains plenty of work to be done to improve force fields – even fixed-charge force fields of the traditional functional form. We still see clear systematic errors which need improvement, so unfortunately our work is not done. But I look forward to the day when force fields are good enough and OpenFF is no longer needed.

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