feat(study_locus_overlap): remove statistics after conditioning from …

…schema
opentargets · Jan 4, 2024 · 9b81fef · 9b81fef
1 parent f2c6897
commit 9b81fef
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diff --git a/src/otg/assets/schemas/study_locus_overlap.json b/src/otg/assets/schemas/study_locus_overlap.json
@@ -68,18 +68,6 @@
               "nullable": true,
               "type": "integer"
             },
-            {
-              "metadata": {},
-              "name": "pValueMantissaConditioned",
-              "nullable": true,
-              "type": "float"
-            },
-            {
-              "metadata": {},
-              "name": "pValueExponentConditioned",
-              "nullable": true,
-              "type": "integer"
-            },
             {
               "metadata": {},
               "name": "beta",
@@ -92,18 +80,6 @@
               "nullable": true,
               "type": "double"
             },
-            {
-              "metadata": {},
-              "name": "betaConditioned",
-              "nullable": true,
-              "type": "double"
-            },
-            {
-              "metadata": {},
-              "name": "standardErrorConditioned",
-              "nullable": true,
-              "type": "double"
-            },
             {
               "metadata": {},
               "name": "r2Overall",
@@ -166,18 +142,6 @@
               "nullable": true,
               "type": "integer"
             },
-            {
-              "metadata": {},
-              "name": "pValueMantissaConditioned",
-              "nullable": true,
-              "type": "float"
-            },
-            {
-              "metadata": {},
-              "name": "pValueExponentConditioned",
-              "nullable": true,
-              "type": "integer"
-            },
             {
               "metadata": {},
               "name": "beta",
@@ -190,18 +154,6 @@
               "nullable": true,
               "type": "double"
             },
-            {
-              "metadata": {},
-              "name": "betaConditioned",
-              "nullable": true,
-              "type": "double"
-            },
-            {
-              "metadata": {},
-              "name": "standardErrorConditioned",
-              "nullable": true,
-              "type": "double"
-            },
             {
               "metadata": {},
               "name": "r2Overall",

diff --git a/tests/dataset/test_study_locus_overlap.py b/tests/dataset/test_study_locus_overlap.py
@@ -93,28 +93,10 @@ def test__find_overlaps(
                             t.StructField(
                                 "pValueExponent", t.IntegerType(), nullable=True
                             ),
-                            t.StructField(
-                                "pValueMantissaConditioned",
-                                t.FloatType(),
-                                nullable=True,
-                            ),
-                            t.StructField(
-                                "pValueExponentConditioned",
-                                t.IntegerType(),
-                                nullable=True,
-                            ),
                             t.StructField("beta", t.DoubleType(), nullable=True),
                             t.StructField(
                                 "standardError", t.DoubleType(), nullable=True
                             ),
-                            t.StructField(
-                                "betaConditioned", t.DoubleType(), nullable=True
-                            ),
-                            t.StructField(
-                                "standardErrorConditioned",
-                                t.DoubleType(),
-                                nullable=True,
-                            ),
                             t.StructField("r2Overall", t.DoubleType(), nullable=True),
                         ]
                     )