Repositories list

• nvflare-cancer

  Public
  Using nvflare federated learning in a cancer research project

  Shell

  •

  Apache License 2.0

  •1•2•0•0•Updated Nov 27, 2024Nov 27, 2024

• TKG-DTI

  Public
  Prediction of drug-target interactions using a knowledge graph that includes the cancer targetome resource

  Jupyter Notebook

  •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• MMDL_FL

  Public
  Updating and refactoring to support a federated learning scenario

  2•1•0•0•Updated Jul 12, 2024Jul 12, 2024

• beataml2.0_data

  Public
  Data accompanying the BeatAML2.0 manuscript

  Creative Commons Attribution 4.0 International

  •2•5•1•0•Updated Feb 13, 2024Feb 13, 2024

• SIG

  Public
  Workflows and code for the Systems Immunogenetics project

  Jupyter Notebook

  •3•1•0•0•Updated Nov 10, 2023Nov 10, 2023

• bias_fairness_in_ml

  Public
  Applied Labs for 'Achieving Fairness in ML/AI'

  HTML

  •0•0•0•0•Updated Jul 18, 2023Jul 18, 2023

• beataml2_manuscript

  Public
  Workflow to reproduce results and figures for the second BeatAML manuscript

  R

  •3•10•0•0•Updated Jun 28, 2022Jun 28, 2022

• cycIF-workflow

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

• HNSCC_Notebook

  Public
  Workflow of light/dark pathways in HNSCC

  HTML

  •1•0•0•0•Updated Oct 24, 2019Oct 24, 2019

• packageDir

  Public
  pathway analysis package for HNSCC paper

  R

  •0•1•0•0•Updated Sep 9, 2019Sep 9, 2019

• immpload

  Public
  Immport upload preparation

  immport

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•0•Updated Sep 4, 2019Sep 4, 2019

• beataml_genomics

  Public
  Public version of BeatAML workflow

  Scala

  •0•0•0•0•Updated Jul 2, 2019Jul 2, 2019

• openCyto

  Public
  A package that provides data analysis pipeline for flow cytometry.

  R

  •29•0•0•0•Updated Nov 8, 2017Nov 8, 2017

• batchtools

  Public
  Tools for computation on batch systems

  R

  •

  GNU Lesser General Public License v3.0

  •51•0•0•0•Updated May 5, 2017May 5, 2017

• BatchJobs

  Public
  BatchJobs: Batch computing with R

  R

  •

  Other

  •20•0•0•0•Updated Oct 10, 2016Oct 10, 2016

• HitWalker2

  Public
  HTML

  •3•5•0•0•Updated Jan 4, 2016Jan 4, 2016

• vcf2maf

  Public
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Perl

  •

  Apache License 2.0

  •218•0•0•0•Updated Jul 13, 2015Jul 13, 2015

• gatk-protected

  Public
  GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

  Java

  •126•0•0•0•Updated May 18, 2015May 18, 2015

• HTCondor_drivers

  Public
  Scala

  •0•0•0•0•Updated May 15, 2015May 15, 2015

• pathLayerDistributionVersion2

  Public
  Experimental version, ie: not guaranteed to function correctly!

  R

  •1•0•0•0•Updated Feb 17, 2015Feb 17, 2015