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    73 repositories

    • morphic-website

      Public
      A generic data catalogue web app to serve the AIT team projects.
      CSS
      •0•1•15•0•Updated Jan 13, 2025Jan 13, 2025

    • ingest-ui

      Public
      This is the UI app for monitoring and tracking submissions to the DCP.
      TypeScript
      •
      Apache License 2.0
      •2•1•0•5•Updated Jan 13, 2025Jan 13, 2025

    • checklist-editor

      Public
      Web UI for maintaining checklists
      TypeScript
      •0•0•0•2•Updated Jan 9, 2025Jan 9, 2025

    • ingest-core

      Public
      Core ingest service components, including minimal metadata representation and caching
      Java
      •
      Apache License 2.0
      •1•1•0•3•Updated Dec 13, 2024Dec 13, 2024

    • geo_to_hca

      Public
      Tools to assist in the automatic conversion of GEO metadata into HCA metadata standard
      Python
      •0•0•3•4•Updated Dec 11, 2024Dec 11, 2024

    • morphic-util

      Public
      CLI tool for file transfer (upload and download) to/from AWS S3.
      Python
      •
      Apache License 2.0
      •2•0•0•1•Updated Dec 9, 2024Dec 9, 2024

    • data-catalogue-microbe

      Public
      TypeScript
      •0•0•1•0•Updated Nov 19, 2024Nov 19, 2024

    • hca-ebi-wrangler-central

      Public
      This repo is for tracking work related to wrangling datasets for the HCA, associated tasks and for maintaining related documentation.
      Jupyter Notebook
      •
      Apache License 2.0
      •2•7•137•7•Updated Nov 6, 2024Nov 6, 2024

    • ingest-broker

      Public
      Scripts for brokering spreadsheets to ingest API, staging files and pushing bundles to datastore
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Nov 4, 2024Nov 4, 2024

    • ingest-kube-deployment

      Public
      config files for accessing and managing Ingest service kubernetes clusters
      Shell
      •0•2•0•5•Updated Oct 22, 2024Oct 22, 2024

    • gitlab-ci-templates

      Public
      Templates for GitLab CI process
      0•1•0•1•Updated Oct 21, 2024Oct 21, 2024

    • hca-ebi-dev-team

      Public
      Repository for hca ebi dev team agile management. See zenhub board
      Jupyter Notebook
      •0•0•154•16•Updated Oct 15, 2024Oct 15, 2024

    • ingest-client

      Public
      Python client library for Ingest
      Python
      •
      Apache License 2.0
      •0•0•0•4•Updated Sep 24, 2024Sep 24, 2024

    • dcp-secure-spreadsheet-upload

      Public
      AWS Lambda function for securely uploading spreadsheet files from Data Contributors to the ingest service, triggered by S3 events.
      Python
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • ingest-validator

      Public
      Scripts for Ingest Validation Service
      TypeScript
      •
      Apache License 2.0
      •0•0•0•1•Updated Aug 30, 2024Aug 30, 2024

    • ingest-integration-tests

      Public
      integration tests for ingest/upload
      Python
      •0•0•0•1•Updated Aug 29, 2024Aug 29, 2024

    • hca-metadata-community

      Public
      HCA metadata standard, HCA metadata schemas and HCA metadata community calls
      SCSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • checklist-converter

      Public archive
      Convert ENA XML checklist to JSON Schema
      Java
      •0•0•1•1•Updated Aug 28, 2024Aug 28, 2024

    • ingest-state-tracking

      Public
      Ingest service dedicated state tracking component
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • schema-store-git

      Public
      0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • ingest-staging-manager

      Public
      Client for handling the creation of staging areas triggered by the ingest service
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • ingest-exporter

      Public
      Python
      •
      Apache License 2.0
      •3•0•0•1•Updated Jul 19, 2024Jul 19, 2024

    • checklist

      Public
      Template repository for checklists
      Apache License 2.0
      •0•1•31•0•Updated Jul 9, 2024Jul 9, 2024

    • json-converter

      Public
      json-converter is a tool for translating/converting a JSON document into another JSON document with a different structure.
      Python
      •7•9•3•4•Updated Jun 26, 2024Jun 26, 2024

    • microbe-central

      Public
      Central repository to store MICROBE-related issues
      0•0•22•0•Updated Jun 25, 2024Jun 25, 2024

    • data-catalogue-frontend-elwazi

      Public
      eLwazi configuration to run data-catalogue-frontend
      TypeScript
      •1•0•1•0•Updated Jun 4, 2024Jun 4, 2024

    • checklist-store-template

      Public
      JSON checklist store template repository
      0•0•0•0•Updated May 21, 2024May 21, 2024

    • checklist-store-tagging

      Public
      Temporary repo to demonstrate usage of tags
      0•0•0•0•Updated May 15, 2024May 15, 2024

    • metadata-schema-publisher

      Public
      Script for creating a repo of schemas in response to Github commits
      Python
      •3•0•3•2•Updated May 3, 2024May 3, 2024

    • data-catalogue-frontend

      Public
      TypeScript
      •0•0•17•1•Updated Apr 23, 2024Apr 23, 2024