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update Readme
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ofilangi committed Jan 20, 2025
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Expand Up @@ -19,6 +19,13 @@ LLMSemanticAnnotator employs Semantic Textual Similarity (STS) to annotate scien

This approach aims to significantly enrich the metadata of scientific articles, thereby facilitating experimental reproducibility, comparative analysis of studies, and large-scale knowledge extraction in the field of plant biology.

## Install

```bash
pip install git+https://github.com/p2m2/encoder-ontology-match-abstract.git@alpha-20241031
```

check [versions](https://github.com/p2m2/encoder-ontology-match-abstract/tags) available

## Run

Expand Down Expand Up @@ -140,25 +147,25 @@ Configures fetching abstracts from local files.
```bash
python3 -m venv llm_semantic_annotator_env
pip install -r requirements.txt
source llm_semantic_annotator_env/bin/activate
pip install -r requirements.txt
python -m unittest discover
```
Run a specific test file
```bash
python3 -m venv llm_semantic_annotator_env
pip install -r requirements.txt
source llm_semantic_annotator_env/bin/activate
pip install -r requirements.txt
python -m unittest tests/similarity/test_model_embedding_manager.py
```
```bash
python3 -m venv llm_semantic_annotator_env
pip install -r requirements.txt
source llm_semantic_annotator_env/bin/activate
pip install -r requirements.txt
python -m llm_semantic_annotator.similarity_evaluator
```

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