Merge pull request #541 from pangenome/refresh_documentation

`odgi paths ... --non-reference-nodes`: emit also node length
pangenome · Dec 4, 2023 · 46aa3d6 · 46aa3d6
2 parents 861b1c0 + 36b1220
commit 46aa3d6
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Showing 7 changed files with 2 additions and 2 deletions.
diff --git a/docs/img/DRB1-3123.du.png b/docs/img/DRB1-3123.du.png
diff --git a/docs/img/DRB1-3123.png b/docs/img/DRB1-3123.png
diff --git a/docs/img/DRB1-3123.z.png b/docs/img/DRB1-3123.z.png
diff --git a/docs/img/LPA.b.png b/docs/img/LPA.b.png
diff --git a/docs/img/LPA.bm.VNTRs.png b/docs/img/LPA.bm.VNTRs.png
diff --git a/docs/img/LPA.bm.png b/docs/img/LPA.bm.png
diff --git a/src/subcommand/paths_main.cpp b/src/subcommand/paths_main.cpp
@@ -416,7 +416,7 @@ int main_paths(int argc, char** argv) {
             }
 
             // Emit non-reference nodes
-            std::cout << "#node.id\tpaths" << std::endl;
+            std::cout << "#node.id\tnode.len\tpaths" << std::endl;
             for (auto x : non_reference_nodes) {
                 const handle_t handle = graph.get_handle(x + shift);
 
@@ -433,7 +433,7 @@ int main_paths(int argc, char** argv) {
                     result += graph.get_path_name(path);
                 }
 
-                std::cout << graph.get_id(handle) << "\t" << result << std::endl;
+                std::cout << graph.get_id(handle) << "\t" << graph.get_length(handle) << "\t" << result << std::endl;
             }
         } else {
             // Emit non-reference ranges