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add blast XML visualizations based on crossbio #61

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add blast XML visualizations based on crossbio #61

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b324ba9
add blast XML visualizations based on crossbio
bgruening May 14, 2015
5739a54
Fix datatype on config to BlastXml.BlastXml, add alternate test using…
carlfeberhard Oct 14, 2015
4ec475b
Merge pull request #1 from carlfeberhard/crossbio
bgruening Oct 14, 2015
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15 changes: 15 additions & 0 deletions visualizations/crossbio_blast/config/crossbio_blast.xml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="BLAST XML Viewer">
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">blast.BlastXml</test>
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@peterjc can you confirm that this is not working for you? If you change it to xml.GenericXml or data.Textit should work.
Another reason to move the BLAST datatypes into the core?

<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<template>crossbio_blast.mako</template>
</visualization>
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