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![Tests](https://github.com/pha4ge/primaschema/actions/workflows/test.yml/badge.svg) [![PyPI version](https://badge.fury.io/py/primaschema.svg)](https://pypi.org/project/primaschema)
# Primaschema

The toolkit for validating and building tiling amplicon PCR primer scheme definitions for inclusion in the [PHA4GE primer-schemes repository](https://github.com/pha4ge/primer-schemes), starting from either 6 or 7 column Primal Scheme-like BED files and metadata contained in a YAML file.
The toolkit for validating and building tiling amplicon PCR primer scheme definitions for inclusion in the [PHA4GE primer-schemes repository, using 6 or 7 column Primal Scheme-like BED files and scheme metadata contained in a YAML file.



## Install (Python 3.10+)

```
# Stable release
# Latest stable release
pip install primaschema
# Main branch
# From main branch
git clone https://github.com/pha4ge/primaschema
pip install primer-schemes
pip install ./primaschema
# Development
git clone https://github.com/pha4ge/primaschema.git
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pytest
```

Some primaschema commands use components from the [primer-schemes](https://github.com/pha4ge/primer-schemes) repository. To show Primaschema where to find these, create the evironment variable `PRIMER_SCHEMES_PATH` pointing to the location of the primer-schemes directory on your machine:
Some Primaschema commands use components from the [primer-schemes](https://github.com/pha4ge/primer-schemes) repository. To show Primaschema where to find these, create the environment variable `PRIMER_SCHEMES_PATH` pointing to the location of the primer-schemes directory on your machine:

```
git clone https://github.com/pha4ge/primer-schemes.git
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