Version 1.2.0

1.2.0 - 2024-11-22

Changed

• Modified the template for input csv file to include a sample_name column in addition to sample in-line with changes to IRIDA-Next update as seen with the speciesabundance pipeline
  • If sample_name is supplied, then the reads will have sample_name prefixed before the accession code
  • sample_name special characters will be replaced with "_"
• Reverted fasterq-dump version to 2.11.0 from 3.0.8 due to issue #865. Solution proposed by fetchngs in PR #261
• Fixed linting issues in CI caused by nf-core 3.0.1
• Updated nf-test snapshots and added new tests for sample_name feature