2.1.4

2.0.0 to 2.1.4

• Internal Changes to how threads are started and killed
• Added a timeout + retry to calls to IRIDA, so dropped connections will be retried.
• Updated the requests library for security patch
• Changed the api layer to use a singleton so multiple instances of the api are not spun off.
• Small bug fixes for GUI
• Fixed UI hanging when recursive directories are searched for runs.

2.0.0

1.6.0 to 2.0.0

• The UI is completely rewritten to better show what's happened with samples as they're uploaded, and to facilitate quality control implementation later.
• Add an experimental auto-upload feature to automatically upload new runs as the sequencer finishes a run (monitoring run directories for CompletedJobInfo.xml).
• Use the sample name and ID columns correctly in SampleSheet.csv: the sample name column is used for naming .fastq.gz files, the sample ID column is used for sending data to IRIDA.
• Discard the cache of projects whenever sending data to the server.

1.6.0

1.5.0 to 1.6.0

• Add an about dialog to show the version number in the UI.
• Changed the way that update notifications are shown: don't have an open in browser button, just create a link.
• Changed the installer to uninstall the previous version before installing the new version (user settings are preserved).
• Use the pubsub built into wxPython rather than pulling in an external version.

1.5.0

1.4.0 to 1.5.0

• Changed the Makefile so that the uploader can be hacked on in other Linux distros, specifically Arch (thanks to @eric.enns)
• Fixed a UI issue where upload labels were overlapping in some cases (thanks to @eric.enns)
• Fixed an issue where the uploader found files that had SampleSheet.csv anywhere in the filename (i.e., old_SampleSheet.csv), now it matches exactly SampleSheet.csv.
• Changed the label Upload speed to Average upload speed to more accurately reflect the value we're reporting.
• Added support for resuming uploads on failure. If the uploader fails when uploading a run, it will now skip any files that were already uploaded.
• Added better error reporting when the uploader can't find the files for the sample by including the directory to help find issues.

1.4.2

• Fix a performance regression when scanning directories for fastq files (thanks to @ericenns)

1.4.1

• Fix a performance regression when scanning directories for fastq files (thanks to @ericenns)

1.4.0

1.3.0 to 1.4.0

• Use pytest for testing instead of the custom testing framework build arount unittest.
• Add a feature to check the github repository for new releases.
• Add a menu File > Exit menu for familiarity.
• Use a wx widget for directory selection instead of building our own.
• Sample sheet parsing happens with a state machine instead of guessing sections based on number of columns.
• Extensive refactoring to move application functionality out of the GUI layer.

1.3.1

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