sistr_cmd v1.0.1
Adds:
- More genomes; 11k to 52790 (thanks Enterobase!)
- Python tables (PyTables) dependency for HDF5 format reading
- cgMLST profiles HDF5 file for faster reading and smaller file size than CSV
Updates:
- cgMLST profiles and alleles databases
- genome to serovar/subspecies tables
- replaced two options for more verbose results with single option (
--more-output/-M
) - cleaned up and added new antigen alleles
Fixes:
- Issue #19
- cgMLST result parsing error (
allele
variable undefined)