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Preparing for 0.11.0 Release #220

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Dec 16, 2024
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Preparing for 0.11.0 Release #220

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de6c1b9
Updating versions.
emarinier Dec 16, 2024
2dd0085
acrB 171 -> acrB 717
emarinier Dec 16, 2024
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3 changes: 1 addition & 2 deletions CHANGELOG.md
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@@ -1,11 +1,10 @@
# Unreleased
# Version 0.11.0

* Updated the Resfinder database to use the 2024-08-06 release.
* Updated the Pointfinder database to use the 2024-08-08 release.
* The Resfinder and Pointfinder databases now use FASTA record IDs with accession numbers (ex: `pmrA` -> `pmrA_1_CP055130.1`). StarAMR has been updated to support this, but database backwards compatibility is unlikely.
* The `genes_to_exclude` is affected by the above change and must now use gene IDs that exactly match the new FASTA record IDs with accession IDs.
* Removed ARG drug key entries with "None" or missing resistance.
* The ARG drug key for salmonella acrB 717 has changed to acrB 171.

# Version 0.10.0

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2 changes: 1 addition & 1 deletion staramr/__init__.py
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__version__ = '0.11.0.dev0'
__version__ = '0.11.0'
2 changes: 1 addition & 1 deletion staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv
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Expand Up @@ -47,7 +47,7 @@ salmonella parE 514 ciprofloxacin I/R,nalidixic acid
salmonella parE 521 ciprofloxacin I/R,nalidixic acid
salmonella 16S_rrsD 1065 spectinomycin
salmonella 16S_rrsD 1192 spectinomycin
salmonella acrB 171 azithromycin
salmonella acrB 717 azithromycin
escherichia_coli gyrA 51 ciprofloxacin I/R,nalidixic acid
escherichia_coli gyrA 67 ciprofloxacin I/R,nalidixic acid
escherichia_coli gyrA 81 ciprofloxacin I/R,nalidixic acid
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