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add get_artifact_html_summary #54

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22 changes: 22 additions & 0 deletions qiita_client/qiita_client.py
Original file line number Diff line number Diff line change
Expand Up @@ -629,6 +629,28 @@ def artifact_and_preparation_files(self, artifact_id,

return files, prep_info

def get_artifact_html_summary(self, artifact_id):
"""Gets the artifact html_summary

Parameters
----------
artifact_id : int
The artifact id

Returns
-------
None or str
filepath of the artifact html_summary
"""
html_summary_fp = None
artifact_info = self.get("/qiita_db/artifacts/%s/" % artifact_id)

if 'html_summary' in artifact_info['files']:
html_summary_fp = artifact_info[
'files']['html_summary'][0]['filepath']

return html_summary_fp

def _process_files_per_sample_fastq(self, files, prep_info,
ignore_small_files):
"helper function to process per_sample_FASTQ artifacts and their preps"
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14 changes: 12 additions & 2 deletions qiita_client/tests/test_qiita_client.py
Original file line number Diff line number Diff line change
Expand Up @@ -171,16 +171,26 @@ def test_post_error(self):
self.tester.post("/qiita_db/artifacts/1/type/")

def test_patch(self):
artifact_id = '2'

# before we patch the artifact by adding the html_summary, the
# html_summary should be None
self.assertIsNone(self.tester.get_artifact_html_summary(artifact_id))

# now, let's patch
fd, fp = mkstemp()
close(fd)
with open(fp, 'w') as f:
f.write('\n')
self.clean_up_files.append(fp)

obs = self.tester.patch('/qiita_db/artifacts/2/', 'add',
obs = self.tester.patch(f'/qiita_db/artifacts/{artifact_id}/', 'add',
'/html_summary/', value=fp)
self.assertIsNone(obs)

# now, the html_summary should contain the filename fp
self.assertTrue(
basename(fp) in self.tester.get_artifact_html_summary(artifact_id))

def test_patch_error(self):
with self.assertRaises(BadRequestError):
self.tester.patch(
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