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qiita-spots · Oct 10, 2024 · 0815b4a · 0815b4a
1 parent c10be82
commit 0815b4a
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/qp_meta/sortmerna/sortmerna.py b/qp_meta/sortmerna/sortmerna.py
@@ -21,11 +21,11 @@
 
 # resources per job
 PPN = 10
-MEMORY = '40g'
+MEMORY = '4g'
 WALLTIME = '30:00:00'
 FINISH_MEMORY = '1g'
 FINISH_WALLTIME = '10:00:00'
-MAX_RUNNING = 8
+MAX_RUNNING = 12
 
 
 def generate_sortmerna_commands(forward_seqs, reverse_seqs, map_file,

diff --git a/qp_meta/sortmerna/tests/test_sortmerna.py b/qp_meta/sortmerna/tests/test_sortmerna.py
@@ -146,10 +146,10 @@ def test_generate_sortmerna_analysis_commands_forward_reverse(self):
             '#SBATCH -N 1\n',
             '#SBATCH -n 10\n',
             '#SBATCH --time 30:00:00\n',
-            '#SBATCH --mem 40g\n',
+            '#SBATCH --mem 4g\n',
             f'#SBATCH --output {out_dir}/{job_id}_%a.log\n',
             f'#SBATCH --error {out_dir}/{job_id}_%a.err\n',
-            '#SBATCH --array 1-2%8\n',
+            '#SBATCH --array 1-2%12\n',
             'set -e\n',
             f'cd {out_dir}\n',
             f'{self.params["environment"]}\n',
@@ -313,10 +313,10 @@ def test_generate_sortmerna_analysis_commands_forward(self):
             '#SBATCH -N 1\n',
             '#SBATCH -n 10\n',
             '#SBATCH --time 30:00:00\n',
-            '#SBATCH --mem 40g\n',
+            '#SBATCH --mem 4g\n',
             f'#SBATCH --output {out_dir}/{job_id}_%a.log\n',
             f'#SBATCH --error {out_dir}/{job_id}_%a.err\n',
-            '#SBATCH --array 1-2%8\n',
+            '#SBATCH --array 1-2%12\n',
             'set -e\n',
             f'cd {out_dir}\n',
             f'{self.params["environment"]}\n',