Adding support for Sequence Coord API

rcsbapi/config.py

@@ -19,9 +19,12 @@
 
 class Config:
     DATA_API_TIMEOUT: int = 60
-    SEARCH_API_REQUESTS_PER_SECOND: int = 10
     SUPPRESS_AUTOCOMPLETE_WARNING: bool = False
 
+    SEARCH_API_REQUESTS_PER_SECOND: int = 10
+
+    SEQ_API_TIMEOUT: int = 60
+
     def __setattr__(self, name, value):
         """Verify attribute exists when a user tries to set a configuration parameter, and ensure proper typing.
         Raises an error if user accidentally tries to create a new, unused attribute (e.g., due to a typo or misspelling),

rcsbapi/const.py

@@ -97,4 +97,10 @@ class Const:
     })
 
 
+@dataclass(frozen=True)
+class SeqConst:
+    API_ENDPOINT: str = "https://sequence-coordinates.rcsb.org"
+
+
+seq_const = SeqConst()
 const = Const()

rcsbapi/data/data_query.py

@@ -164,7 +164,6 @@ def exec(self) -> Dict[str, Any]:
         if len(self._input_ids) > batch_size:
             batched_ids = self._batch_ids(batch_size)
             response_json: Dict[str, Any] = {}
-            # count = 0
             for id_batch in batched_ids:
                 query = re.sub(r"\[([^]]+)\]", f"{id_batch}".replace("'", '"'), self._query)
                 part_response = requests.post(

rcsbapi/sequence/__init__.py

@@ -0,0 +1,16 @@
+"""RCSB PDB Sequence Coordinates API."""
+from rcsbapi.sequence.seq_schema import SeqSchema
+
+SEQ_SCHEMA = SeqSchema()
+
+from rcsbapi.sequence.seq_query import Alignments, GroupAlignments, Annotations, GroupAnnotations, GroupAnnotationsSummary, AnnotationFilterInput  # noqa: E402
+
+__all__ = [
+    "AnnotationFilterInput",
+    "SeqSchema",
+    "alignments",
+    "annotations",
+    "group_alignments",
+    "group_annotations",
+    "group_annotations_summary",
+]