fix testing loop

sagc-bioinformatics · Mar 29, 2024 · d19b089 · d19b089
1 parent 328e380
commit d19b089
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Showing 16 changed files with 11 additions and 1 deletion.
diff --git a/testing_data/output/extras_test/ds1/sample1.mgikit.sample_stats b/testing_data/output/extras_test/ds1/sample1.mgikit.sample_stats
@@ -0,0 +1,2 @@
+job_number	sample_id	r1_qc_30	r2_qc_30	r3_qc_30	r1_bases	r2_bases	r3_bases	r1_qc	r2_qc	r3_qc	all_reads	0-mismatches
+.	sample1	167	0	0	200	200	0	6162	5600	0	4	4
diff --git a/testing_data/output/extras_test/ds1/sample1_S1_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds1/sample1_S1_L01_R1_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds1/sample1_S1_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds1/sample1_S1_L01_R2_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds2/sample2.mgikit.sample_stats b/testing_data/output/extras_test/ds2/sample2.mgikit.sample_stats
@@ -0,0 +1,2 @@
+job_number	sample_id	r1_qc_30	r2_qc_30	r3_qc_30	r1_bases	r2_bases	r3_bases	r1_qc	r2_qc	r3_qc	all_reads	0-mismatches
+.	sample2	167	0	32	200	200	32	6162	5600	1120	4	4
diff --git a/testing_data/output/extras_test/ds2/sample2_S2_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds2/sample2_S2_L01_R1_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds2/sample2_S2_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds2/sample2_S2_L01_R2_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds3/sample3.mgikit.sample_stats b/testing_data/output/extras_test/ds3/sample3.mgikit.sample_stats
@@ -0,0 +1,2 @@
+job_number	sample_id	r1_qc_30	r2_qc_30	r3_qc_30	r1_bases	r2_bases	r3_bases	r1_qc	r2_qc	r3_qc	all_reads	0-mismatches
+.	sample3	56	0	0	56	180	40	1848	2340	520	2	2
diff --git a/testing_data/output/extras_test/ds3/sample3_S3_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds3/sample3_S3_L01_R1_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds3/sample3_S3_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds3/sample3_S3_L01_R2_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds5/sample1.mgikit.sample_stats b/testing_data/output/extras_test/ds5/sample1.mgikit.sample_stats
@@ -0,0 +1,2 @@
+job_number	sample_id	r1_qc_30	r2_qc_30	r3_qc_30	r1_bases	r2_bases	r3_bases	r1_qc	r2_qc	r3_qc	all_reads	0-mismatches
+.	sample1	167	0	0	200	200	0	6162	5600	0	4	4
diff --git a/testing_data/output/extras_test/ds6/sample1_S1_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds6/sample1_S1_L01_R1_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds6/sample1_S1_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds6/sample1_S1_L01_R2_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds7/sample1.mgikit.sample_stats b/testing_data/output/extras_test/ds7/sample1.mgikit.sample_stats
@@ -0,0 +1,2 @@
+job_number	sample_id	r1_qc_30	r2_qc_30	r3_qc_30	r1_bases	r2_bases	r3_bases	r1_qc	r2_qc	r3_qc	all_reads	0-mismatches	1-mismatches
+.	sample1	167	0	0	200	200	0	6162	5600	0	4	0	4
diff --git a/testing_data/output/extras_test/ds7/sample1_S1_L01_R1_001.fastq.gz b/testing_data/output/extras_test/ds7/sample1_S1_L01_R1_001.fastq.gz
diff --git a/testing_data/output/extras_test/ds7/sample1_S1_L01_R2_001.fastq.gz b/testing_data/output/extras_test/ds7/sample1_S1_L01_R2_001.fastq.gz
diff --git a/tests/integration_test.rs b/tests/integration_test.rs
@@ -160,7 +160,7 @@ fn testing_template() {
 
 #[test]
 fn testing_demultiplex() {
-    for ds_itr_tmp in 1..2{//15{
+    for ds_itr_tmp in 1..15{
         let mut disable_illumina_format = false;
         let ds_itr_in = match ds_itr_tmp{
             6 => 1,
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches
		. sample1 167 0 0 200 200 0 6162 5600 0 4 4
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches
		. sample2 167 0 32 200 200 32 6162 5600 1120 4 4
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		job_number sample_id r1_qc_30 r2_qc_30 r3_qc_30 r1_bases r2_bases r3_bases r1_qc r2_qc r3_qc all_reads 0-mismatches
		. sample3 56 0 0 56 180 40 1848 2340 520 2 2